PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_097270_ronh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 340aa    MW: 38775.7 Da    PI: 7.3055
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_097270_ronh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-1934115998
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         d l  +++++pk f e+ + +   +++ +l+++ g +W+v+l   ++ ++ ++++GWkeF++a++ ke+D ++Fk++++s+f  +v vf+
  Bv4_097270_ronh.t1  34 DFL--SQIMIPKIFSEKLKDI--LPQMAVLKSPGGATWDVQL--VRNNETLYFREGWKEFAEAHNFKENDLLIFKYERDSCF--NVWVFD 115
                         444..458*******999877..7889***************..999999****************************9***..888877 PP
2B356.84e-18228317193
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+ v+++++v++  rl++p +  +e+  +k+++  + l++ + ++W+ +++ + + g+ vl +GW++Fvk+n Lke D++vF+l++++++ 
  Bv4_097270_ronh.t1 228 FKVVMKNNNVSNYYRLSIPAPWSREYLAPKNQD--VELRT-DDKKWTARFNLEPRCGGGVLVSGWSKFVKDNSLKEFDVCVFQLVSQKDEP 315
                         7788999999999*************8787776..55544.77*******9999*9999************************99876664 PP

                         .E CS
                  B3  92 lv 93 
                           
  Bv4_097270_ronh.t1 316 AI 317
                         44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.69224117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.55E-2124116IPR015300DNA-binding pseudobarrel domain
CDDcd100178.55E-1825115No hitNo description
SMARTSM010199.2E-1927117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-2127116IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-1732115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-20224325IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-19227312IPR015300DNA-binding pseudobarrel domain
CDDcd100177.86E-20227324No hitNo description
SMARTSM010196.9E-12228321IPR003340B3 DNA binding domain
PfamPF023623.5E-16228317IPR003340B3 DNA binding domain
PROSITE profilePS5086313.281228326IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAEDGNDGDC TRFQEMTYWT NFKSFRFFVF LPADFLSQIM IPKIFSEKLK DILPQMAVLK  60
SPGGATWDVQ LVRNNETLYF REGWKEFAEA HNFKENDLLI FKYERDSCFN VWVFDSRSLC  120
EKAGSYFVWK SASRKNEAGE NSQLKRKKHT GDSVDAAVHN ENPELEGSDS ELDPAGASMK  180
KSRRKTMCGL RTSDAEASTP YTDKSPPSAA EKERPVPIAD RELTKESFKV VMKNNNVSNY  240
YRLSIPAPWS REYLAPKNQD VELRTDDKKW TARFNLEPRC GGGVLVSGWS KFVKDNSLKE  300
FDVCVFQLVS QKDEPAIFDV LISRATPQVA NQPSSKPFSV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695063.10.0PREDICTED: B3 domain-containing protein REM16
TrEMBLA0A0J8E4890.0A0A0J8E489_BETVU; Uncharacterized protein
STRINGXP_010695063.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-58B3 family protein