PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv4_091730_afia.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 147aa MW: 16692.1 Da PI: 6.9336 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.6 | 4.5e-13 | 30 | 121 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+ vl +s+v+ s + +p + ++ + +++s+ lt++ rsW++++ ++ + + ++ WkeFv +n+Lk+gD +vF+ ++rs+++ Bv4_091730_afia.t1 30 FDIVLCKSHVFPSYHIAVPSESTR---LLPTKSVPLTFTR-GKRSWKLTYMGNGAHLKRIDSSSWKEFVIDNRLKVGDACVFEIMERSDTS 116 566777888888887888888874...3345664555443.55*******4444444455669********************88776666 PP .EEEE CS B3 92 lvvkv 96 l++kv Bv4_091730_afia.t1 117 LKFKV 121 66554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-12 | 26 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-13 | 27 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-14 | 28 | 125 | No hit | No description |
PROSITE profile | PS50863 | 10.997 | 30 | 127 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0053 | 30 | 127 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-10 | 31 | 121 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 147 aa Download sequence Send to blast |
MMKEEQTSEP VSEKTCSDDE IEPLTGKPFF DIVLCKSHVF PSYHIAVPSE STRLLPTKSV 60 PLTFTRGKRS WKLTYMGNGA HLKRIDSSSW KEFVIDNRLK VGDACVFEIM ERSDTSLKFK 120 VQVLRGDFPS VLLDREHGSS NNPVIIE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010694215.1 | 1e-106 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A0K9QEU5 | 1e-45 | A0A0K9QEU5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694215.1 | 1e-105 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-08 | B3 family protein |