PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv4_091720_nksd.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 160aa MW: 18031.5 Da PI: 4.3973 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.9 | 4.3e-14 | 41 | 138 | 1 | 98 |
EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS B3 1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 f+ +lt+s+v+ +l+lp +f++ +k ++ ++ + grsWe ++ ++ + + + W+ F+++n Lk+gD +vF+l+ r Bv4_091720_nksd.t1 41 FDLILTRSHVGDAyrFQLILPQPFTRLLPNK---TVP-VILTCGGRSWETTYLGDNAAYQKKFDQRWRAFAEDNMLKVGDACVFELMeCRd 127 566788888887755788*******655433...333.4456799*******9899998999***********************886566 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++ +++v+v+r Bv4_091720_nksd.t1 128 TSLKFKVQVLR 138 88888888877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-16 | 37 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.47E-15 | 37 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.26E-18 | 39 | 138 | No hit | No description |
SMART | SM01019 | 2.8E-8 | 41 | 140 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.969 | 43 | 140 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-11 | 44 | 138 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 160 aa Download sequence Send to blast |
MSEGLELMQK NEQVCALESA SVPPDSCHDD DIDPLSGKPY FDLILTRSHV GDAYRFQLIL 60 PQPFTRLLPN KTVPVILTCG GRSWETTYLG DNAAYQKKFD QRWRAFAEDN MLKVGDACVF 120 ELMECRDTSL KFKVQVLRGD FPSILLGDQD GTIDNPIVVE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010694213.1 | 1e-117 | PREDICTED: B3 domain-containing protein Os04g0386900 | ||||
Refseq | XP_010694214.1 | 1e-117 | PREDICTED: B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A0K9QEU5 | 2e-62 | A0A0K9QEU5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694213.1 | 1e-117 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58280.1 | 2e-06 | B3 family protein |