PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_089910_wkkq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 630aa    MW: 68422.1 Da    PI: 6.4625
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_089910_wkkq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1016.9e-32268325260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  Bv4_089910_wkkq.t1 268 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSP-DGTITEIIYKGTHDHPK 325
                         8****************************************.***************85 PP
2WRKY107.94.9e-34443501159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct++gCpv+k+ver+++dpk+v++tYeg+Hnhe
  Bv4_089910_wkkq.t1 443 LDDGYRWRKYGQKVVRGNPNPRSYYKCTHPGCPVRKHVERASHDPKAVITTYEGKHNHE 501
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-27260326IPR003657WRKY domain
PROSITE profilePS5081122.699262326IPR003657WRKY domain
SuperFamilySSF1182906.8E-25263326IPR003657WRKY domain
SMARTSM007748.7E-34267325IPR003657WRKY domain
PfamPF031063.7E-24268324IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-38428503IPR003657WRKY domain
SuperFamilySSF1182909.42E-30435503IPR003657WRKY domain
PROSITE profilePS5081138.102438503IPR003657WRKY domain
SMARTSM007745.1E-40443502IPR003657WRKY domain
PfamPF031062.3E-26444501IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MDDSSTTVAG TFSVESPATS SLMITTIDGS DLRKTTTNES CATSTVSNHQ NNNINTNSYN  60
YNNSNNNNNN NARYKLMSPA KLPISRSPCI TVPPMFSPTS FIESPVFLSN LKGEPSPTTG  120
SLFKPQMMQC TSGGSTTYPS VMNSASTLDG TQSNGFEFKP NSGSYSFGGF SFPGSLVSSA  180
ELNQQQAGQV NQVQPECPSQ TSDPPVVVKS EVAPTNEQRS TMALPSSAVP PEVDSNELNQ  240
KDDSNNEGQT PPSEQKGLGS QVSERTSDDG YNWRKYGQKL VKGSEFPRSY YKCTHPNCEV  300
KKLFERSPDG TITEIIYKGT HDHPKPQPNR RLPAGSMMSA LEEKSDRVPP FNGQEGMPAN  360
SYGQTAHNNE SSGTPDLSPC GANDNSGDLG ASQLNRVTDD ADDDDPYAKR RRMEIGEMDI  420
NSVVKPIREP RVVVQTVSEV DILDDGYRWR KYGQKVVRGN PNPRSYYKCT HPGCPVRKHV  480
ERASHDPKAV ITTYEGKHNH EVPTARNSSH DTAAPTATSM ASRMGSREGN DAVSLDLGVG  540
IRSGSEFVQG HQQQAMAGEH LPGQPQYSSH NLLLLQPTQM STFPGYVNGG MVLYGSRENH  600
SQGHSIGNQP VNHSSSNSYQ QNMGRILMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-37268503877Probable WRKY transcription factor 4
2lex_A4e-37268503877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675876.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-160WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0K9S1830.0A0A0K9S183_SPIOL; Uncharacterized protein
STRINGXP_010675876.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-154WRKY family protein