PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_089420_mdiu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 308aa    MW: 35488.6 Da    PI: 6.6749
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_089420_mdiu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.64.6e-2298158259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqK++ +s++pr YYrC+++   +C+++k+v+r +++p+   itY+ +H+++
  Bv4_089420_mdiu.t1  98 TDGHTWRKYGQKSIINSKHPREYYRCAYKedqNCEATKHVQRISNNPTNYRITYHAHHTCQ 158
                         6***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-2487159IPR003657WRKY domain
SuperFamilySSF1182903.01E-2290158IPR003657WRKY domain
PROSITE profilePS5081120.07192155IPR003657WRKY domain
SMARTSM007747.6E-3097159IPR003657WRKY domain
PfamPF031068.1E-2299158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDKKVVEEEL KKGWEASSQL RNLLLLPADQ KSQYSNNERM RELMKNYSNT ILNSFDNSIS  60
ILKKFAKSME MEASIGQKTN RCPPNSRLRT ITSRTLTTDG HTWRKYGQKS IINSKHPREY  120
YRCAYKEDQN CEATKHVQRI SNNPTNYRIT YHAHHTCQHV LNYNNASDIN VLDSFEEEFT  180
NFISFESRKQ IHHPKQDLKP TALCSSSISD NNPNLNPPLL MPHEGDYPSS MTGYRAISRS  240
PDQIIKMESS ITDDIAYFNY PDALFSPSIF MTPDYMASSN VEVAEDYNLI TGDSSDKGDA  300
LQDLRLWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-19991581069OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675831.10.0PREDICTED: probable WRKY transcription factor 46
STRINGXP_010675831.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-22WRKY DNA-binding protein 38