PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_086850_ncij.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family SBP
Protein Properties Length: 267aa    MW: 30332.4 Da    PI: 10.1321
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_086850_ncij.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP107.77.8e-34126217278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS...............SEEETTT--SS--S-STTTT-------S-- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs...............rfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         Cq+e+C+adl++ak+yhrrhkvCe+h+kap+vlvs+l+qrfCqqCs               rfhelsefDe+krsCrrrLa+hnerrrk++
  Bv4_086850_ncij.t2 126 CQAEKCTADLTDAKRYHRRHKVCEFHAKAPSVLVSNLRQRFCQQCSrnsgilqlwriyitcRFHELSEFDETKRSCRRRLAGHNERRRKSS 216
                         *********************************************94445555554444445***************************97 PP

                         - CS
                 SBP  78 a 78 
                         +
  Bv4_086850_ncij.t2 217 S 217
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-31120202IPR004333Transcription factor, SBP-box
PROSITE profilePS5114127.658123215IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-31124219IPR004333Transcription factor, SBP-box
PfamPF031101.7E-17126172IPR004333Transcription factor, SBP-box
PfamPF031101.4E-8187214IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDFHKPENTA TSKRMMMMMM RDKTTKTRTS HKNNTSTINF VDHDQEDKLS DDDNNNNNNN  60
NNNHMGVADQ EHELTMSRTT HDTFTTTTTT TNDEKKPKRA TAAHTGRRVA SAAGGGGGER  120
GGIISCQAEK CTADLTDAKR YHRRHKVCEF HAKAPSVLVS NLRQRFCQQC SRNSGILQLW  180
RIYITCRFHE LSEFDETKRS CRRRLAGHNE RRRKSSSDTQ GEGGSSSNQT KGNNPQFRPP  240
SDHERANITQ ISYSGNGTST YKQFQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-33122214784squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675500.11e-146PREDICTED: squamosa promoter-binding-like protein 4
STRINGXP_010675500.11e-146(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-37squamosa promoter binding protein-like 3