PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_084290_hkeq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 587aa    MW: 67014 Da    PI: 8.768
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_084290_hkeq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-14351111294
                         HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          ++ lvlp kfa++++   + + ++ l+ + g sWe++l   k+++  + ++ Wk+Fvkan+Lke+  +vFk++++ +fe  v
  Bv4_084290_hkeq.t1  35 FHDHLVLPEKFAANMKT--QLPDKVPLKGPGGASWEIEL--LKCDDLLFVGNEWKDFVKANDLKENCLLVFKYKRNLGFE--V 111
                         4566********76654..48889***************..********************************9987773..3 PP
2B333.76.5e-11479568192
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..se 89 
                         f+ v+ p  v k+  l++p + + ++   ++++++++l+  + ++W   l y +++g+  l++GWk+F+ +n L+e D++vFkl+++  + 
  Bv4_084290_hkeq.t1 479 FIAVMRPTGVYKRFFLSVPANWLHKYL--PRRNQEIVLRV-KDQTWVTSLFYYGSRGG-GLSTGWKKFALENFLEEFDVLVFKLVSKkdEV 565
                         778899999**************8884..34555677665.66889999977777666.5899********************99651233 PP

                         E.. CS
                  B3  90 fel 92 
                         + l
  Bv4_084290_hkeq.t1 566 AVL 568
                         444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.26624117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-1724115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-1725115IPR015300DNA-binding pseudobarrel domain
CDDcd100177.87E-1426115No hitNo description
SMARTSM010193.8E-1527117IPR003340B3 DNA binding domain
PfamPF023626.2E-1236112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-16475574IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-15476574IPR015300DNA-binding pseudobarrel domain
CDDcd100179.89E-16478574No hitNo description
SMARTSM010191.3E-7479576IPR003340B3 DNA binding domain
PfamPF023626.5E-10479564IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462479576IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MEENSECKNC STWEEEMYWK HFNSMHFCQT LQQDFHDHLV LPEKFAANMK TQLPDKVPLK  60
GPGGASWEIE LLKCDDLLFV GNEWKDFVKA NDLKENCLLV FKYKRNLGFE VIIIDEGSSC  120
EKESAYFVKK CRHTKSDLEV VKKRSSREAS STEVIEDDGD EDSPFVVSKK SRKEDGLVAC  180
SGEKVNFQTP RKRVVNAAAR RRGRPRRVQP CKSTIKPNVR SSEKNSISDE AAKDLSHASH  240
INVITPDNGE SFPEKDHSHK LESQSKKNLN GDDAAREPNL ISTIELITPE NGENSQAADR  300
SQTLKAQSEN QPSGDVSVIQ PSQIFERNLI ENGELFQVID HSPIMKAQSE KLPSRDDTSN  360
KLKWISDKEL NTPENDLVEK ELMERGTAKK LKQISGREMI RPDYKESSAE EDRACKTRVK  420
RGRGKKQNLP KSSKKLVFKS VSDGKRFSRE YISNRRAVTE MEKEDALQRA NTKLTPNSFI  480
AVMRPTGVYK RFFLSVPANW LHKYLPRRNQ EIVLRVKDQT WVTSLFYYGS RGGGLSTGWK  540
KFALENFLEE FDVLVFKLVS KKDEVAVLDV DIFRVVSNIV PPLPMIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675171.10.0PREDICTED: B3 domain-containing protein REM16 isoform X1
TrEMBLA0A0K9QIC10.0A0A0K9QIC1_SPIOL; Uncharacterized protein
STRINGXP_010675171.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-31B3 family protein