PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_084280_wqeg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 526aa    MW: 60698.4 Da    PI: 8.1609
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_084280_wqeg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.2e-17351161199
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + ++ lvlp kfa++   +   s +++++ +sg  We+ l  +k+++  + ++GWkeFvka +L+++  ++Fk++++s+f   v +f++
  Bv4_084280_wqeg.t1  35 F-HDHLVLPEKFAAHVTTQ--LSDKVSVTGPSGTIWEIDL--QKNDNLLFVGDGWKEFVKAYDLQANYLLMFKYKRNSSF--EVLIFDQ 116
                         3.456********666544..7789***************..*********************************99999..8888876 PP
2B332.51.6e-10412503194
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                         f+ v+ p  v ++  l++p + +++h ++  ++  +++    + ++W   + y  k+g   +  GWk+Fv +n L+e D+++Fkld++ ++
  Bv4_084280_wqeg.t1 412 FIVVMRPTCVYRRFYLSIPAEWMNAHlNLH-HQ--EIV-LRIDDKTWLTMFYYYEKRGVGGICPGWKKFVLENSLEEFDVLLFKLDNQkDN 498
                         6778889999999*************5444.44..455.4457899999998877777766778*********************987566 PP

                         E..EE CS
                  B3  90 felvv 94 
                         ++ v+
  Bv4_084280_wqeg.t1 499 AKIVF 503
                         66555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.59224117IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1925116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-1925116IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-1626115No hitNo description
SMARTSM010191.5E-1727117IPR003340B3 DNA binding domain
PfamPF023625.2E-1434116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-17405509IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-17410504IPR015300DNA-binding pseudobarrel domain
CDDcd100173.80E-18411509No hitNo description
PROSITE profilePS5086311.166412511IPR003340B3 DNA binding domain
SMARTSM010193.8E-6412511IPR003340B3 DNA binding domain
PfamPF023625.3E-9412503IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MEQKSGCEHC KTWEEEMYWK HFNAMHFCQI LPRNFHDHLV LPEKFAAHVT TQLSDKVSVT  60
GPSGTIWEID LQKNDNLLFV GDGWKEFVKA YDLQANYLLM FKYKRNSSFE VLIFDQESFC  120
EKEAAYFVKK CRHNKSEYEN HKKRSIEREG SSIEAIEDDT SDDDSALVVS KKSKKDVEEE  180
VGCLGHEKGT HSPVSHTSNA AVKRRGRPRK KVVPCNSLSE PKAQSKHKSD RNEATQELSQ  240
TSLSDMNIPE NGENSHEKDH SDKLRDQSEK NQSGNDVPQE PNLISGKDRS TPDNFSEMKR  300
SHRLSALYGK EPSENGNAKI PSQISSRDLM TYDTIDSSPE ADYSQKPRRK RGRPRNVSVP  360
LVPVSSTKRV SRSVPAGTKY TEEYMSNRRE VTQMEKQNAL QRAKQQQTEN SFIVVMRPTC  420
VYRRFYLSIP AEWMNAHLNL HHQEIVLRID DKTWLTMFYY YEKRGVGGIC PGWKKFVLEN  480
SLEEFDVLLF KLDNQKDNAK IVFDVEIFRV IPKILPPLLL TSSSMK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675170.10.0PREDICTED: B3 domain-containing protein REM16 isoform X2
TrEMBLA0A0K9QIC11e-140A0A0K9QIC1_SPIOL; Uncharacterized protein
STRINGXP_010675170.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-34B3 family protein