PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_084080_rwwj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 322aa    MW: 36148.5 Da    PI: 8.7254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_084080_rwwj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lv+++k +G g+W++ ++  g+ R++k+c++rw +yl
  Bv4_084080_rwwj.t1 14 KGAWTKEEDDRLVNYIKSHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61
                        79********************************************97 PP
2Myb_DNA-binding60.34.1e-1967111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
  Bv4_084080_rwwj.t1  67 RGNFTEEEDELIINLHSLLGNK-WSLIAAKLP-GRTDNEIKNYWNTH 111
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.729961IPR017930Myb domain
SuperFamilySSF466895.29E-3013108IPR009057Homeodomain-like
SMARTSM007178.3E-131363IPR001005SANT/Myb domain
PfamPF002492.5E-151461IPR001005SANT/Myb domain
CDDcd001679.85E-111661No hitNo description
PROSITE profilePS5129429.36262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2865116IPR009057Homeodomain-like
SMARTSM007172.7E-1866114IPR001005SANT/Myb domain
PfamPF002492.8E-1767111IPR001005SANT/Myb domain
CDDcd001671.49E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDDRLVNYIK SHGEGCWRSL PKAAGLQRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIN LHSLLGNKWS LIAAKLPGRT DNEIKNYWNT HIKRKLLSRG  120
IDPQTHRVLN SSTTIATPTA NTIATTKIAV SNNYYNNDNN DSNNNNTFQL INIRGSTLHF  180
GLGSNLKHEF STSTRSTDAK LYCTTFPTIR TSNISEDHSN SSSVVTEEEG YKEINLELSI  240
SLPTSSKINS ANHETIMKNQ EPQKYMTYQV FGTTTRVPVL TKGGSVCLCH NNLEFQNNGS  300
QCNCYTPMTT TAAKVCNSGK LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29141167108B-MYB
1h8a_C6e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675151.10.0PREDICTED: transcription repressor MYB6
SwissprotP813952e-86MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A067F6D41e-101A0A067F6D4_CITSI; Uncharacterized protein
TrEMBLV4RXM71e-101V4RXM7_9ROSI; Uncharacterized protein
STRINGXP_010675151.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-86myb domain protein 7
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]