PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_084030_exhz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family G2-like
Protein Properties Length: 433aa    MW: 47309.6 Da    PI: 5.1653
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_084030_exhz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.47.6e-34253307155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r+rWtpeLHe+Fv+av++LGGse+AtPk +l++m+v+gLt++hvkSHLQkYR+
  Bv4_084030_exhz.t1 253 KARMRWTPELHEAFVDAVNHLGGSERATPKGVLKHMNVEGLTIYHVKSHLQKYRT 307
                         68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.73E-18250307IPR009057Homeodomain-like
PROSITE profilePS5129413.788250310IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-31251308IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24253307IPR006447Myb domain, plants
PfamPF002491.6E-10255306IPR001005SANT/Myb domain
PfamPF143792.2E-22339385IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEMNMRSALP MQPSGGKCFN ELTVPASYSS PLPVLTNPLE DFPKSPNSFF VPSSREMIAS  60
PLQMQTNPIV SHIGSSSSDS PFVGGFPADL HFPSFSPHET LPQHSPFISQ PAGGRLDFPP  120
NHGTVSDAQS AGYINYQKDD DDNSWSTGQL QGLLDLPEGV SLVNGQVGNS IEGISSDNHV  180
KKIGWSDLDI FADSIEPNWN ELLADSNAVD QQQKMPQASS DVVAPQPPTQ QQLSLPSREV  240
SASTNTSSST QNKARMRWTP ELHEAFVDAV NHLGGSERAT PKGVLKHMNV EGLTIYHVKS  300
HLQKYRTARV RPESSEGNSE RKCSSVEQVS SVDLKTSVTI TEALRMQMEV QKQLHEQLEI  360
QRKLQLQIEE QGKYLLQMLE NQNKTEKEKV KSVPSSTGDD ISPPKDKSEA SASDAGGSGS  420
PPLKRPRTDD SVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-31253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-31253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-31253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-31253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-31253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-31253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-31253311260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-31253311260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2199721e-120AF219972.1 Mesembryanthemum crystallinum CDPK substrate protein 1 (csp1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675144.10.0PREDICTED: myb family transcription factor PHL13
TrEMBLA0A0K9QCD60.0A0A0K9QCD6_SPIOL; Uncharacterized protein
STRINGXP_010675144.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.13e-74G2-like family protein