PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv4_083890_jjmx.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | WRKY | ||||||||
Protein Properties | Length: 360aa MW: 40363.1 Da PI: 10.5307 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101 | 7.2e-32 | 293 | 351 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+k Bv4_083890_jjmx.t1 293 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHSK 351 9************************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.3E-16 | 244 | 289 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-34 | 279 | 350 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.354 | 286 | 352 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-27 | 287 | 350 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-39 | 291 | 351 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-27 | 293 | 349 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEIELANKVA VESGHRVFSL ICQKQESQER NLIAQTGDAV CKFKRVVSLL GKKSFGHARM 60 RKLNNLPQSL PEKIFLETPH LNPETSAKPI QLLPSSGFMR NSVSEIDQTS QNSSQISQKM 120 LVEKPSVDVS LSVKPPGQNP TQQKPTQNIQ FLQQQQQFQQ QMLQRLQIQQ QMKYQADMMN 180 NSSRSGSGIN LKFDGSSTCT QTMSSNRSFV SSLSMDGSIA SLSRNSFRLI GLPQSSDPNS 240 QHLRRRCLVK GEGGSVKCGN NAKCHCSKKR KLRVKRSIKV PAISNKNADI PPDEYSWRKY 300 GQKPIKGSPH PRGYYKCSSM RGCPARKHVE RCLEDPSMLI VTYEGEHNHS KFIASHSSQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-20 | 289 | 349 | 12 | 71 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010675100.1 | 0.0 | PREDICTED: probable WRKY transcription factor 74 | ||||
Swissprot | Q9SR07 | 1e-107 | WRK39_ARATH; Probable WRKY transcription factor 39 | ||||
TrEMBL | A0A0K9R9P0 | 0.0 | A0A0K9R9P0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010675100.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 1e-107 | WRKY DNA-binding protein 39 |
Publications ? help Back to Top | |||
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