PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_081300_apqo.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 281aa    MW: 32551.4 Da    PI: 8.9204
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_081300_apqo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3681.3e-2114104199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ffkv +    ++s++lv+p +f+++++gk+   ++++l++ +g+ W+v+l  +k  ++ ++tkGW++Fv +n L  g+f++F+++g+  f 
  Bv4_081300_apqo.t1  14 FFKVYL--PEHNSNQLVIPPDFVKNFEGKT--MTKVILKNMQGEGWKVEL--EKAECKLLMTKGWESFVIDNSLARGEFLIFTYEGSGVF- 97 
                         788884..4556677********9999885..458***************..********************************997777. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +vk+f++
  Bv4_081300_apqo.t1  98 -FVKIFST 104
                         .****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-246107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-238107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.10112105IPR003340B3 DNA binding domain
CDDcd100175.45E-1712103No hitNo description
SMARTSM010194.0E-2014105IPR003340B3 DNA binding domain
PfamPF023626.0E-1914104IPR003340B3 DNA binding domain
SMARTSM010190.46166266IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-9170246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-9173244IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.29200264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MHSRNSDTQD FPEFFKVYLP EHNSNQLVIP PDFVKNFEGK TMTKVILKNM QGEGWKVELE  60
KAECKLLMTK GWESFVIDNS LARGEFLIFT YEGSGVFFVK IFSTNGCEKD ESTAIVDQPY  120
AKLKQEANLD KNYSCHAGAC EKTYSERCME VKQVSEDSCE LKNIRFKKVH DAKPYHLHIP  180
AGIFSEYNIK PPLVNFPEII LLRDQRGVSQ EVKVYKTKDR RVLLTSGWRN FQLESKLVKG  240
EAYEYEIILG EGRKIKEIVL LNRPTKTVTQ GRHTLLRLRS R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674817.11e-110PREDICTED: putative B3 domain-containing protein At5g66980
TrEMBLA0A0K9S0M51e-104A0A0K9S0M5_SPIOL; Uncharacterized protein
STRINGXP_010674817.11e-109(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-21B3 family protein