PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_079240_zfig.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 449aa    MW: 50184 Da    PI: 7.4032
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_079240_zfig.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l++ ++q+G g+W+++++  g+ R++k+c++rw +yl
  Bv4_079240_zfig.t1 14 KGLWSPEEDEKLLRHITQYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP
2Myb_DNA-binding47.15.4e-1567110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++++eE+ l+v++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Bv4_079240_zfig.t1  67 RGAFSQEEENLIVELHAVLGNK-WSQIAAQLP-GRTDNEIKNLWNS 110
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.469961IPR017930Myb domain
SuperFamilySSF466894.03E-2912108IPR009057Homeodomain-like
SMARTSM007173.8E-131363IPR001005SANT/Myb domain
PfamPF002494.9E-151461IPR001005SANT/Myb domain
CDDcd001672.47E-111761No hitNo description
PROSITE profilePS5129425.88362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2565116IPR009057Homeodomain-like
SMARTSM007171.1E-1266114IPR001005SANT/Myb domain
PfamPF002491.3E-1367111IPR001005SANT/Myb domain
CDDcd001671.18E-869109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT QYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SQEEENLIVE LHAVLGNKWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPNTHKPLS EVEIEEEKAK SSNTSNNSSN TTNNSNNSRK TEKLSVLSTM INNDNNTTTT  180
INLTNTNTNS TTAAATTNHT NNSTTFTLSS PPLPPPQQLS THEFFPDSIY GSFGFHQNNQ  240
AAICFNNSSL QTTSRNNVTT SYDNHCHYSI PSIIPFISTT DFGNNGYQNI DNTTTTTTAT  300
TTSTSHESSN NNTMHDHLNN NNNNNNNNGS FFDNFSWATI TDQSSSVKPN KNIQINSSNI  360
GLDVTNPDEI KWSEYLQTPL LLTPTNNGAN TSTYGEIKTE TSSIMPFTSS STWHQNQQPS  420
PPPPMPSFHG SDMYNKDLQR LAEAFGQIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674459.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A0K9RHR61e-156A0A0K9RHR6_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010674459.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.15e-89myb domain protein 61