PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_076300_ezna.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family M-type_MADS
Protein Properties Length: 165aa    MW: 19240.1 Da    PI: 5.9092
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_076300_ezna.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.4e-161050242
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i n+s r+ tf kR++g+lKK eEL +LC+++++ ii+s+
  Bv4_076300_ezna.t1 10 YIANDSARKATFKKRKKGLLKKVEELTTLCGVDACAIIYSP 50
                        599*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.507149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-24185IPR002100Transcription factor, MADS-box
CDDcd002661.18E-19285No hitNo description
PRINTSPR004044.2E-10323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MTRNKVKLEY IANDSARKAT FKKRKKGLLK KVEELTTLCG VDACAIIYSP YDARPEVWPS  60
QIGARRVLAR FMNLSQEEQE KKMLDQETYL RQRIAKASQQ LEKIRDENRE REMSELMHQC  120
LGGVTSLEEL SLKDTMDLCL VADKTLELID KRIEFLHKTE EDDDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674108.11e-118PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-51AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0J8CQI51e-117A0A0J8CQI5_BETVU; Uncharacterized protein
STRINGXP_010674108.11e-118(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-44AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]