PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv4_073590_ypds.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

HB-other

Protein Properties

Length: 499aa MW: 56542.5 Da PI: 7.1548

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv4_073590_ypds.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.5e-19	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++R+ t++ql++Le+++++++yp++++++eLA++lgLte+q++ WF+ rR k+k+ Bv4_073590_ypds.t1 20 KRRRFKTPSQLQALEDFYNEHKYPTESMKAELADHLGLTEKQISGWFCHRRLKDKR 75 6777789***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-20	3	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.957	16	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.45E-17	18	83	IPR009057	Homeodomain-like
SMART	SM00389	2.2E-19	19	80	IPR001356	Homeobox domain
CDD	cd00086	1.46E-16	20	75	No hit	No description
Pfam	PF00046	4.0E-17	20	75	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MEETNELQGE ENKALPEKNK RRRFKTPSQL QALEDFYNEH KYPTESMKAE LADHLGLTEK 60 QISGWFCHRR LKDKRIVNGE LNPPGRQDLS SGVIQDRGSG LRQDSCSSTK QGDYRLADVR 120 EVESRRFGHN DLPAAEIKYE RRMLDDGTEM DDTSSESNSA LPGSFYPHNR SPLNIETTEY 180 RAPNGLIAPN KRRVGPSGYL KIKGQTENAA VTAVKRQLGR HYREDGPSLG IEFDPLPPGA 240 FESPSKIANT DAYGLAEPIG SCSLDIGVIN KRPGLNAIRN QDKYVAPTDY RSLHKSDPDS 300 FAYRQPKQKS PFPNNGRAFP VQKSSFCADS YPARENPDYD GSVNHNIQRK HETPGTGSDS 360 YGRKFANEPE EPWWHNSDKG NSVAVRRRER IDSRSAAVPV RHMDPMVKED RVPPSRMKKD 420 EELYADRRSI GEPHDSIKLK MRPTNELRAG KMAREDFWQE DFSIRSQEPP QWSRQIKGST 480 ELPSSFSEDE TAETSSSMD

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MEETNELQGE ENKALPEKNK RRRFKTPSQL QALEDFYNEH KYPTESMKAE LADHLGLTEK  60
QISGWFCHRR LKDKRIVNGE LNPPGRQDLS SGVIQDRGSG LRQDSCSSTK QGDYRLADVR  120
EVESRRFGHN DLPAAEIKYE RRMLDDGTEM DDTSSESNSA LPGSFYPHNR SPLNIETTEY  180
RAPNGLIAPN KRRVGPSGYL KIKGQTENAA VTAVKRQLGR HYREDGPSLG IEFDPLPPGA  240
FESPSKIANT DAYGLAEPIG SCSLDIGVIN KRPGLNAIRN QDKYVAPTDY RSLHKSDPDS  300
FAYRQPKQKS PFPNNGRAFP VQKSSFCADS YPARENPDYD GSVNHNIQRK HETPGTGSDS  360
YGRKFANEPE EPWWHNSDKG NSVAVRRRER IDSRSAAVPV RHMDPMVKED RVPPSRMKKD  420
EELYADRRSI GEPHDSIKLK MRPTNELRAG KMAREDFWQE DFSIRSQEPP QWSRQIKGST  480
ELPSSFSEDE TAETSSSMD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673742.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1
TrEMBL	A0A0K9RSS5	0.0	A0A0K9RSS5_SPIOL; Uncharacterized protein
STRING	XP_010673742.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-68	HB-other family protein