PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_072670_namy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 675aa    MW: 73926.1 Da    PI: 6.2339
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_072670_namy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-07273293526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C++Gd C +aHg
  Bv4_072670_namy.t1 273 PCPEFRK-GACRRGDMCEYAHG 293
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.14E-1425142IPR020683Ankyrin repeat-containing domain
PfamPF127963.3E-963132IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.51263139IPR020683Ankyrin repeat-containing domain
SMARTSM002480.186393IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.204.1E-1565143IPR020683Ankyrin repeat-containing domain
CDDcd002041.26E-1265141No hitNo description
SMARTSM002480.002798130IPR002110Ankyrin repeat
PROSITE profilePS5008811.78198133IPR002110Ankyrin repeat
SMARTSM003569.5E-6268294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981273295IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4273293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4301331IPR000571Zinc finger, CCCH-type
SMARTSM0035621303326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MDAKMNSFSE TLEAKISFSH LLELAADNDV EGFKLNVESN PNVINEIGLW YGRQLGARGM  60
VLEYRTPLII ASMYGSLDVM KVILAQAEVD VNCSCGSDKC TALHYAASGG SVDAIDAVKL  120
LVVNGADPNL VDAKGNRPYD VITVSRMLPQ LRGSLEDMLF HLGSNDQKDL CDLVNDLKVA  180
PLSIPTVLES KSLSTPLEAP SSPMASKKEY PVDPSLPDIN NNIYATDEFR MYSFKVRPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPEFRKG ACRRGDMCEY AHGVFECWLH  300
PAQYRTRLCK DGTSCNRRVC FFAHTPQELR PLYASTGSAV PSPRSVASAA AVMDMAAALN  360
LFPGSPSAAS AMSPSPFTPP LSPSGNGIPH SSAGWQQQNI PTLHLPGFNT QANNMQTSRL  420
RSSLNARDIH AEELSMLHDL EQRRMLNDMS CFSQPQFNSP RSKIMAPSNL DDLFSAAEIS  480
SPSQKSAVLS HFQQQQQSML SPINTKAFSP NPVDHTLVQV SFGPSSPGIM SSPRLSALAL  540
RDKQQQMRSL SARDLGSHLP RDLIPENGGM VGSPVSVASW SNWESPSNRR ADWSVNGDEL  600
NRLKRSYTSG HNGEEPDLSW VQSLVKDSPS SDIKEVQNNT VPSSMLYADG SNSDSQVESV  660
DHSALGAWLD QIAAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673641.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1S3U6240.0A0A1S3U624_VIGRR; zinc finger CCCH domain-containing protein 30-like isoform X2
TrEMBLA0A1S3U6530.0A0A1S3U653_VIGRR; zinc finger CCCH domain-containing protein 30-like isoform X1
STRINGXP_010673641.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain