PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv4_072390_ztzm.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Trihelix

Protein Properties

Length: 458aa MW: 52497.6 Da PI: 6.9466

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv4_072390_ztzm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.3	3.2e-21	126	222	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt++ v++Li+++ +++++ ++ +kk++W+ vs++m + +++sp+qC++k+++lnkrykk++++ +++ +++++++ Bv4_072390_ztzm.t1 126 KWTDNVVRLLIAVVASVGDEGMFEAkdglkrksamlQKKGKWKMVSNVMISNNCSVSPQQCEDKFNDLNKRYKKLNDILGRGtSCQVVENP 216 7************998888865446777778899********************************************669999999 PP trihelix 80 pyfdql 85 ++ d + Bv4_072390_ztzm.t1 217 SLMDAM 222 998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.7E-18	124	249	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MDRSSLGGGF LSGSNGRLLD MEMPVDKFQH RQMGHSLMTH QPLELHPMNM MSGAENEQPL 60 GFLEAKGLSL KGMSMDFNKG KGISLGCSPS NNNTSEDEEP SFTEDMNGEN CNVAKDRKES 120 PWQRMKWTDN VVRLLIAVVA SVGDEGMFEA KDGLKRKSAM LQKKGKWKMV SNVMISNNCS 180 VSPQQCEDKF NDLNKRYKKL NDILGRGTSC QVVENPSLMD AMPHLTEKAK DEVKKILSSK 240 HLFYREMCAF HNGQRIPGCH DIDLQAHLLP LANHPNENNL SEMQEADRND ESDSDDSYEE 300 DEKNIDTKAG RMEEYYARSS RNRGRASFSL LSSGQDCNRM ELEPTFPEMT KSPTEQRAQI 360 QHRMLQLEMQ KVRLQAEALD IEKQRLKWLR FRSKKDRELE KLRLENDRMK LENDRMVLLL 420 KQKEMVLGMQ KSETSLERTS LSIDRLQGRD GTKTDRHL

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MDRSSLGGGF LSGSNGRLLD MEMPVDKFQH RQMGHSLMTH QPLELHPMNM MSGAENEQPL  60
GFLEAKGLSL KGMSMDFNKG KGISLGCSPS NNNTSEDEEP SFTEDMNGEN CNVAKDRKES  120
PWQRMKWTDN VVRLLIAVVA SVGDEGMFEA KDGLKRKSAM LQKKGKWKMV SNVMISNNCS  180
VSPQQCEDKF NDLNKRYKKL NDILGRGTSC QVVENPSLMD AMPHLTEKAK DEVKKILSSK  240
HLFYREMCAF HNGQRIPGCH DIDLQAHLLP LANHPNENNL SEMQEADRND ESDSDDSYEE  300
DEKNIDTKAG RMEEYYARSS RNRGRASFSL LSSGQDCNRM ELEPTFPEMT KSPTEQRAQI  360
QHRMLQLEMQ KVRLQAEALD IEKQRLKWLR FRSKKDRELE KLRLENDRMK LENDRMVLLL  420
KQKEMVLGMQ KSETSLERTS LSIDRLQGRD GTKTDRHL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673612.1	0.0	PREDICTED: uncharacterized protein LOC104889964
TrEMBL	A0A0K9RLX4	0.0	A0A0K9RLX4_SPIOL; Uncharacterized protein
STRING	XP_010673612.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	6e-89	sequence-specific DNA binding transcription factors