PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv4_071710_xxkn.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 734aa    MW: 83622.5 Da    PI: 10.1699
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv4_071710_xxkn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-092860336
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
                         W t E++llv+av+++G+++W++Ia++++ +R 
  Bv4_071710_xxkn.t1 28 VWGTLEELLLVCAVNRHGSKSWDSIAKELQ-KRM 60
                        69***************************9.786 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00332592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-52661IPR009057Homeodomain-like
PfamPF002491.2E-82862IPR001005SANT/Myb domain
CDDcd001673.28E-42959No hitNo description
SMARTSM002971.9E-20298407IPR001487Bromodomain
SuperFamilySSF473704.45E-21300417IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.2E-17304409IPR001487Bromodomain
CDDcd043696.64E-16309402No hitNo description
PfamPF004391.0E-11311392IPR001487Bromodomain
PROSITE profilePS5001412.43317388IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MEVEETTSSN NGELKEEREY EDEEDEEVWG TLEELLLVCA VNRHGSKSWD SIAKELQKRM  60
KHSSYNEEKN KESLCLLSSE NCEKKYVHLK RRFRYEDEEE KNDDVLRMVD ELKKLRVQEL  120
KRQVHRHDVS IVSLQLKVKK LEEERESSKV KEEEEEEDDV DLRIKTEENA TKIGEKREKT  180
SRSSPEKVIT GDSAENRSCN ESNSTNHQKT DNIKANTTTK ERESAKLKLE PDEPVKNKPV  240
NDAKVSRLTE LGESISESRR QQSSDVQSSA SLSKKKRRRF RGGGDSGDEL EAEEVSPANK  300
RINVKSQPLI RFLENLRSHK HGSVFQRRLP SQETEKYRDV IRQHMDLDTL QSRLDKGIYC  360
DCHPKFYRDL LLIFTNAVLF YRKSSAEHIA ARELRKLVID EITQKTRKPK IQPRKPDPEP  420
QHLEPVVKKP RSSTTMVVCR RRSSSSMQAL SNCMKKGDTN NIISTTNSKS NNPSSKVENG  480
RKEIKPDHHI KKVDASSNNN SNSNSNSNKK EKESDKSGGD GGGGGARIDG NLKKLLTKER  540
SNLGNGSLRL SYNNGKKIIS KDGNKREKMR NVSKEESSNS EGEGAELVER KKVNNTEQKQ  600
EKGTPIVLKK QGVANFLKRM KQNSPSSQEK VKNNDPVDED EVEDQERGGR KEKIQSVKKA  660
GGNLKKSIKE HEVNATRRSS GRRGDKEAEM SRRGIGRPPK RKAAMMSGST PDSTKRGRSG  720
GRDSGEKLKK KPRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273278KKKRRR
2726732KLKKKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673541.10.0PREDICTED: bromodomain-containing protein DDB_G0280777
TrEMBLA0A0K9S0C20.0A0A0K9S0C2_SPIOL; Uncharacterized protein
STRINGXP_010673541.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.13e-29DNA-binding bromodomain-containing protein