PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv3_066110_niai.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

TCP

Protein Properties

Length: 355aa MW: 37532.9 Da PI: 6.89

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv3_066110_niai.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.5	1.4e-35	61	131	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+ ai+e+tgt++++a ++ Bv3_066110_niai.t1 61 VRKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIKWLLERAESAIIEATGTGTIPAIAV 131 79*************************************************************99999444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	26.576	66	120	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.6E-29	66	137	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MEDEEYNSSS NNDNNSTNSG EFPADPLPPV DTSASRAIIP VPLKVEPTET VTLATPPPLV 60 VRKRPSKDRH TKVEGRGRRI RMPAACAARI FQLTRELGHK SDGETIKWLL ERAESAIIEA 120 TGTGTIPAIA VSVNGTLKIP TTPAVNGEDL GVKKRRRTNN SDFVDVTDVG VSSGVTLSSG 180 LAPIMSNTVA LGQCAAQAPG AAHAHQGLVP LWPTNFFMLP NAAGGAQQAH IWAATPVFGL 240 AARPISGFMS EMVSGRYEPS HSSSSGTSNG NALTTNNIIG NNNTSGTTTT ATQLLREFSL 300 EIYDKRELQL MSGRPINSNN SESNHQGMSQ EQQVQLQVQT GGSSSTTPPP SSQAV

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MEDEEYNSSS NNDNNSTNSG EFPADPLPPV DTSASRAIIP VPLKVEPTET VTLATPPPLV  60
VRKRPSKDRH TKVEGRGRRI RMPAACAARI FQLTRELGHK SDGETIKWLL ERAESAIIEA  120
TGTGTIPAIA VSVNGTLKIP TTPAVNGEDL GVKKRRRTNN SDFVDVTDVG VSSGVTLSSG  180
LAPIMSNTVA LGQCAAQAPG AAHAHQGLVP LWPTNFFMLP NAAGGAQQAH IWAATPVFGL  240
AARPISGFMS EMVSGRYEPS HSSSSGTSNG NALTTNNIIG NNNTSGTTTT ATQLLREFSL  300
EIYDKRELQL MSGRPINSNN SESNHQGMSQ EQQVQLQVQT GGSSSTTPPP SSQAV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693449.1	0.0	PREDICTED: transcription factor TCP19
Swissprot	Q9LT89	2e-67	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A0K9QYN3	1e-102	A0A0K9QYN3_SPIOL; Uncharacterized protein
STRING	XP_010693449.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-54	TCP family protein