PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_064600_wiae.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 1167aa    MW: 132721 Da    PI: 5.4195
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_064600_wiae.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.61e-22100160159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +dDg++WrKYGqKe+ ++++pr+YYrCt++   gC+++k+v++++ ++++  i Y g H ++
  Bv3_064600_wiae.t1 100 VDDGFAWRKYGQKEILSAKYPRHYYRCTHRhsqGCCATKQVQKND-EGNTYSILYLGLHSCS 160
                         59***************************98999*********99.9************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-2194160IPR003657WRKY domain
PROSITE profilePS5081117.05295143IPR003657WRKY domain
SuperFamilySSF1182902.48E-2096160IPR003657WRKY domain
SMARTSM007744.2E-32100161IPR003657WRKY domain
PfamPF031061.2E-20101159IPR003657WRKY domain
SuperFamilySSF525401.4E-43263510IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.3E-52279535IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3002.7E-11283403IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003646.0E-18289304No hitNo description
PRINTSPR003646.0E-18362376No hitNo description
PRINTSPR003646.0E-18454468No hitNo description
SuperFamilySSF520581.29E-21570585IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.29E-21623815IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.2E-15652776IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138551.2E-6676731IPR001611Leucine-rich repeat
PRINTSPR003646.0E-18718734No hitNo description
SuperFamilySSF520581.29E-219021030IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.5E-69221034IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.5E-610671123IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.29E-2110911117IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1167 aa     Download sequence    Send to blast
MRNKEFTASG VSVPVPVPEE MELDLRETEE LCNKDRDCDL MAMTPQEQED FEPPSKRGKT  60
EFEPPSKQGK GEFDLPSKQR KGVIESNKKA RFLTETTTQV DDGFAWRKYG QKEILSAKYP  120
RHYYRCTHRH SQGCCATKQV QKNDEGNTYS ILYLGLHSCS TGIIASGSTS LIPVEHSFME  180
DNREREINVI PSKICNYDVT GKIRQEESIT SSTSILTESD MWGSSDSMLS TDDRMMREGE  240
NETNSTYSCW SKLERDRDSD SWPILKFIGS IDGNLQRLLS AFQDVEVKKI GIYGNGGIGK  300
TTMMKTFLSQ YDLPRVFDLV LWVTRPRCSS RRKIQNTLAQ QLSLHVQDIK SDDEVAMILL  360
QTLQARKFIL FLDDVWEYMD LLKVGIPISS LDNDYKIILT TRSIHVCEAM KVDKFIEAEV  420
LSREQSLRLF RSHAGHVMDS LDIEPYGRAI VNECYGLPLV IKVVGRALSM DNSVFAWKHA  480
LKEILLTNTL EVLKIGYSKL RHDMRSCFLY SALFTESEAV RISSLVECLV DEGCVAGSIS  540
DARIRGNDII KQLVDIALLE CTDDGSMVEM HGLICDLALV ILSDVKGLQM LLSRYLRSIL  600
PQKRLLFNIS NPTFEEPESS GRENFLPSGR HLSILKAGEG VSEPPSEEEW EEAKMVFLMD  660
NTFSRLPKRP TCSKLLLLFL QRNSSLRAIP SSFFENMFSL QILNLSKTRI KSLPESLLKL  720
ECLQVLILRN CERLLFLPSD IGELKNLLVL DVHGTEICQL PNRISELLCL VHLQVCFYGS  780
MDEDECAILP PQLISKGIIS NLIQLKELSI NVYPGDPRWI MIASDVTTEV SNLKLCSLSF  840
HFPETGHLEY FINTSPAWLH RTLTHFNLIV GHDVKRIVSH VSDDLEHEYN QQDRCLRFVD  900
GDDISDAIRK VLPRATAFYL DHHLTALSIT QFGWGNTNLL EFCLVRDCPK LNTIINSTNR  960
TGYCFLSLEV LSIHYCWNLS RLWVGPIRAG TLSMLRRLSV HSCPKLEFII SRPMLAVLVK  1020
LEEMIVVDCQ SLRSVICNDD TDNNDSAEPS IVDLNSIEYM AEDEMQTSPR TFPDNTGFTL  1080
KVLKLHYLPK LVKVWDGGKF PCLESISVYN CPRLRNLDLN SCVEDTLKEV KAETGWWGDL  1140
EWDDPALPAK LQTHVKEIKS DDIWGTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C3e-23251859139758Disease resistance RPP13-like protein 4
6j5t_F3e-23251859139758Disease resistance RPP13-like protein 4
6j5t_G3e-23251859139758Disease resistance RPP13-like protein 4
6j5t_L3e-23251859139758Disease resistance RPP13-like protein 4
6j5t_O3e-23251859139758Disease resistance RPP13-like protein 4
6j5u_A3e-23251859139758Disease resistance RPP13-like protein 4
6j5v_A3e-23251859139758Disease resistance RPP13-like protein 4
6j5w_A3e-23251859139758Disease resistance RPP13-like protein 4
6j6i_C3e-23251859139758Disease resistance RPP13-like protein 4
6j6i_F3e-23251859139758Disease resistance RPP13-like protein 4
6j6i_G3e-23251859139758Disease resistance RPP13-like protein 4
6j6i_L3e-23251859139758Disease resistance RPP13-like protein 4
6j6i_O3e-23251859139758Disease resistance RPP13-like protein 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673258.10.0PREDICTED: disease resistance protein At4g27190 isoform X1
TrEMBLA0A0K9RNI40.0A0A0K9RNI4_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010673258.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-24WRKY DNA-binding protein 70