PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_061640_umpm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 579aa    MW: 64199.7 Da    PI: 8.1698
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_061640_umpm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.91.4e-32241152102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y +++d++++++isw++ g++fvv+++ ef++++Lp+ Fkh nf+SFvRQLn+YgF+kv +++         weF++++F++gk+e
  Bv3_061640_umpm.t1  24 FLLKTYMLVDDPATDTVISWNDGGTAFVVWQPAEFSRDLLPTLFKHCNFSSFVRQLNTYGFRKVATNR---------WEFSNDKFQRGKRE 105
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                          l +i+r+k 
  Bv3_061640_umpm.t1 106 FLGQIRRRKA 115
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3516107IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3119113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.8E-5120113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-172447IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.5E-2924113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-176274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-177587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MEGGVCDKEL LEYAIMRKSN PPPFLLKTYM LVDDPATDTV ISWNDGGTAF VVWQPAEFSR  60
DLLPTLFKHC NFSSFVRQLN TYGFRKVATN RWEFSNDKFQ RGKREFLGQI RRRKAYRQPP  120
PTVAALPTSL EAPPHNHDED QRSSSTSSSS ELNILVDENK RLKMENGVLS SELTTMKNKC  180
NELLGLVAIY ANRKEENDDD DDDDNYKKQP KLFGVRLEVQ GERERKRKRS EEVYETARLL  240
LSQSCKHVDV HVVDSSDEDY VEVESSQPSM EPPNLPSQAN NPSSHESDHH TNPPASYSRG  300
SPDSVTQLLS PATSSHEVLP PPGRRLGGDD IIYGRIGGSF PLRDGHGPSN AAIPYSLSSA  360
VGSPDEGRAR GVRFPFRRHL GITTRPPTAF RVSLDQEDIS APTNNEASGS DPDEAGPSAW  420
LRLHPPPQSV QEDTSSNSDG PCGGSAHLRA VHDGPKCFFA GNKRCMEPLQ RTLSVEGMDG  480
LAFKGRSKDC NGKRQRLAQW EAKGGFNVGA HPGRVRGKAI TDISMARHLG VEPGLEITSK  540
KRQAVTSAPM PAGKWIFKRQ RSTGGICKQT TWITNSRWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-201911324129Heat shock factor protein 1
5d5v_B8e-201911324129Heat shock factor protein 1
5d5v_D8e-201911324129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-61heat shock transcription factor B3