PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_061270_euhf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 697aa    MW: 77227.1 Da    PI: 5.9708
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_061270_euhf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.4e-11633686146
                         TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqk 46 
                         + +WT+eE+  l+++v+++ gg     Wk+I +  g    kgRt+ ++k++w++
  Bv3_061270_euhf.t1 633 KVPWTAEEEAVLKKGVELYQGGsratPWKSILEFGGsvfqKGRTAIDLKDKWRN 686
                         579**************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.1E-9376429IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579036.64E-10377430IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.929379428IPR019787Zinc finger, PHD-finger
SMARTSM002493.0E-7381426IPR001965Zinc finger, PHD-type
PROSITE patternPS013590382425IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5129411.909628692IPR017930Myb domain
SuperFamilySSF466891.79E-10630689IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-10630689IPR009057Homeodomain-like
SMARTSM007179.8E-6632690IPR001005SANT/Myb domain
PfamPF002491.8E-6633687IPR001005SANT/Myb domain
CDDcd116601.31E-11634689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MEEEMSNSTV AWSWVIEALA KSELVDYTLL YDLMSKAPPL SGNSGKVAME AAALRCLEGL  60
CGPPNVSGEN NVVHDPSKIR FDPAETCEVV LPCILSEISA SKGMLDELKW DVQSFIKHKR  120
ANLPKSTLEL LKDVILEGTH SLADSLKEIS GLAVPDQCVL NIPFDGGDPT SPQLRSDEGD  180
HGDKTMLAED PACSQKIQTD NHVQEIHADN HVQEIYADNH VQEIHADNHV QEIHADNHVQ  240
EIHADNYVQE IHADNHVQEI HADNHVQEIH ATPRKKLKLD QSKQQHTVPV GSNQMSNGTE  300
HGQYHEVMNA NGILDGNSYG KDVDEQAKEY EGSHLQQQLS PSIGYHCREE TDFAMKNSNL  360
LGSHCVFTGN FLTMSETEAN ICMKCNKDGQ LLSCSSSSCP LLFHESCLGS SAHFDGQGNF  420
YCPFCVYSRA IAEYVRAKEK VSSARKELSL FIGGRSDDQQ EHDSDTSSGD NVSQDRRRNV  480
DKKDELKKGA NVVIQAAKPV QRSVTGKQLE LSHSSTCMDV NGFLMGTQRK LSFKDRQGAE  540
IIIQFSRDPS LIWNQGQDGH GRVGAKLSSD KELKTRRESK SCKITELHGD NSSESISDSD  600
GLHEDKRDVS TSPIASPTPL REIPGTPRYR RKKVPWTAEE EAVLKKGVEL YQGGSRATPW  660
KSILEFGGSV FQKGRTAIDL KDKWRNITRG TSPKVKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672769.10.0PREDICTED: uncharacterized protein LOC104889276 isoform X1
RefseqXP_010672770.10.0PREDICTED: uncharacterized protein LOC104889276 isoform X1
RefseqXP_010672771.10.0PREDICTED: uncharacterized protein LOC104889276 isoform X1
TrEMBLA0A0K9RT570.0A0A0K9RT57_SPIOL; Uncharacterized protein
STRINGXP_010672769.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.25e-07MYB_related family protein