PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_060340_hinp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 626aa    MW: 70098.1 Da    PI: 10.1365
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_060340_hinp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88.1e-112964137
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                        + +W t E++ll++av+++G+++W++Ia++++ +Rt 
  Bv3_060340_hinp.t1 29 KSSWGTLEELLLACAVHRYGTNSWDSIAKELQ-NRTT 64
                        578*****************************.9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-72266IPR009057Homeodomain-like
PROSITE profilePS500906.6092481IPR017877Myb-like domain
SuperFamilySSF466894.37E-72668IPR009057Homeodomain-like
SMARTSM007171.2E-52883IPR001005SANT/Myb domain
PfamPF002494.9E-102964IPR001005SANT/Myb domain
CDDcd001671.03E-63181No hitNo description
SMARTSM002977.8E-14291395IPR001487Bromodomain
CDDcd043691.65E-16294390No hitNo description
SuperFamilySSF473701.44E-17298394IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.5E-16298412IPR001487Bromodomain
PROSITE profilePS5001412.844313376IPR001487Bromodomain
PfamPF004393.5E-11314379IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MAEPPSSSPT QNTITTTTTT NTNNNTSTKS SWGTLEELLL ACAVHRYGTN SWDSIAKELQ  60
NRTTFSLLTP HICQQKYRDI KRRFSDDRNA VVEDQNAAVR WLDELRRLRV AELRRDLQRY  120
DLSIVSLQLK VKRLKEEKEK EEIKEDLNKT EENEPADVKG PVEPEGNKPD RISEPDRVSE  180
PADEEDDSCN GSSNSKEERR EGRRERVDSA ELVESVAESK DESGGERGVK ESSDVQSTAS  240
LWRSENNNDN SNDKDNNNNN IIKRRREKKI GLFSGSSSGD ENQSPAFKSS NESKSQPLVE  300
FLEIVRARKL GLFFERLECQ ETPKYTSLIK QHIDLGAIQR RLEEGQYADC HTKFYRDLML  360
LINNTIIFFP KNSPEYKAAL ELRQLLNKQY QPRLSSKPAQ PAPLPKPTKP EPKQVDQSDL  420
KPKLTINGPV IACRKRSSIA GKSSRGVSDR KERAVVALED EKPAITLGEM VKKRTRDQSF  480
GSRSSSSKNN NSNPSPSNTV SGKGENSGAK ADKKKPTLGN LSNKMKQGSG SGKSLLLESL  540
KSSDKRKTSN DGNVKSERRK DEGLQNVLGS SKLGKEKAKA KEEKESLENR SNRRPPKRAA  600
AIAAMGKRGR DGGGEGDSQS KKRQRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672669.10.0PREDICTED: putative mediator of RNA polymerase II transcription subunit 26
TrEMBLA0A0K9RLA50.0A0A0K9RLA5_SPIOL; Uncharacterized protein
STRINGXP_010672669.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-53DNA-binding bromodomain-containing protein