PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv3_057810_jijh.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | GRAS | ||||||||
Protein Properties | Length: 452aa MW: 51964.6 Da PI: 7.2365 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 285.5 | 1.5e-87 | 69 | 441 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lL ec +a+ +++ ++ q+lL+ l+elasp+gd qRla yf++A + ++s+ + y++l+ e++++ ++ ++ + f+evsP+ +f Bv3_057810_jijh.t1 69 TLLHECGKAIFQKNPTKSQQLLWVLNELASPYGDCDQRLAYYFLQAFFVKANNSGLQYYDTLKFVEEKNYCFDTYVKLMLKFQEVSPWTTF 159 6899***************************************************************98889999999989********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.va 183 +h++ N aIlea+ege+ +HiiD++ + ++QWp Ll+aLa+R++++p+lR+T v+s +s ++ ++e+ ++++kfA+ +gvpf+f+v+ Bv3_057810_jijh.t1 160 GHVASNGAILEALEGESNLHIIDLSNTLCTQWPMLLEALATRNDETPHLRLTSVVS-TSLETIITKEISKKMEKFARLMGVPFKFHVIgGL 249 ********************************************************.6679999***********************9777 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsle 272 + l++++ e+L +k gE+++Vn++ +l+r+ +e+ r +v+++++s++P +v++ve+e+d+ ++++F + f e+l++y fd+le Bv3_057810_jijh.t1 250 DCLKEMKKEDLGLKDGEVVVVNCIQALQRVQ-----VEN-RGAVIDMIQSIRPSIVTIVEEEVDLttTRSDFGKCFEECLRFYRLYFDMLE 334 899**************************97.....555.88********************999656789******************** PP GRAS 273 aklpreseerikvErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee...sg 356 +++ + s+er k+Er +r+iv+++ace e r e++++W+++l++a F p++++++++ ++++llr++k s+ + ++ + Bv3_057810_jijh.t1 335 ESFLPISNERLKLERN-QSRKIVKALACEIGEigeEYWRPEKASQWSKKLKQA-FIPYHFNDEIVGDVQALLRRYKaSWDLDLPQKdygEV 423 9999************.9**********977632246699***********98.**********************888888876644344 PP GRAS 357 slvlgWkdrpLvsvSaWr 374 + l W+d+p+v++SaW+ Bv3_057810_jijh.t1 424 GIHLKWRDEPVVWASAWK 441 556**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.288 | 41 | 417 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.3E-85 | 69 | 441 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MPHSIENSFS LTSDHSLVPK RNTSFPLQLP GKWLINQTIK KPLKNHRESN NNNTRSPNST 60 KPCVGWISTL LHECGKAIFQ KNPTKSQQLL WVLNELASPY GDCDQRLAYY FLQAFFVKAN 120 NSGLQYYDTL KFVEEKNYCF DTYVKLMLKF QEVSPWTTFG HVASNGAILE ALEGESNLHI 180 IDLSNTLCTQ WPMLLEALAT RNDETPHLRL TSVVSTSLET IITKEISKKM EKFARLMGVP 240 FKFHVIGGLD CLKEMKKEDL GLKDGEVVVV NCIQALQRVQ VENRGAVIDM IQSIRPSIVT 300 IVEEEVDLTT TRSDFGKCFE ECLRFYRLYF DMLEESFLPI SNERLKLERN QSRKIVKALA 360 CEIGEIGEEY WRPEKASQWS KKLKQAFIPY HFNDEIVGDV QALLRRYKAS WDLDLPQKDY 420 GEVGIHLKWR DEPVVWASAW KPNISSSPQN PS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 1e-118 | 66 | 443 | 32 | 421 | Protein SHORT-ROOT |
5b3h_E | 1e-118 | 66 | 443 | 32 | 421 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010672262.1 | 0.0 | PREDICTED: protein SHORT-ROOT | ||||
Swissprot | Q9SZF7 | 1e-117 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A0K9QY05 | 0.0 | A0A0K9QY05_SPIOL; Uncharacterized protein | ||||
STRING | XP_010672262.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 1e-119 | GRAS family protein |