PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv3_057610_ycxm.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | B3 | ||||||||
Protein Properties | Length: 110aa MW: 12734.7 Da PI: 8.8409 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65.3 | 9.3e-21 | 13 | 102 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f++++++s+ lk g ++lp +fa+e+++ + + ++tl d+sg+ W+++l+y++++ + v +GW++F +ngLkegD vvF+l+ ++ Bv3_057610_ycxm.t1 13 FCQTTVKSYCLKWGGIILPMNFAKENDLAN-KWCDITLIDQSGKAWQLQLRYTNRKWASVYIGGWSKFHLENGLKEGDHVVFELIAVgEN- 101 88999*********************6553.4448*****************77766645555********************9974333. PP .. CS B3 91 el 92 + Bv3_057610_ycxm.t1 102 -P 102 .3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-17 | 11 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-20 | 11 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.2E-16 | 13 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-18 | 13 | 104 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.592 | 13 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.12E-18 | 13 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MEKVTFNFRG HPFCQTTVKS YCLKWGGIIL PMNFAKENDL ANKWCDITLI DQSGKAWQLQ 60 LRYTNRKWAS VYIGGWSKFH LENGLKEGDH VVFELIAVGE NPTMNFYKLG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010672241.1 | 5e-79 | PREDICTED: B3 domain-containing protein REM14 | ||||
STRING | XP_010672241.1 | 2e-78 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31615.1 | 2e-12 | B3 family protein |