PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv3_057590_qsmh.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | B3 | ||||||||
Protein Properties | Length: 145aa MW: 16471.9 Da PI: 10.2286 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.2 | 3.5e-19 | 53 | 142 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++++++lk g + +p +fa+eh++ ++++ ++++ de+g++W++ l rk++++++++ W++F ++n+L +gD ++F+l+++ e +v+ Bv3_057590_qsmh.t1 53 TFVQPSTLKWGGMAIPTDFAKEHDLANNCG-EVIILDERGKTWQLSL--RKYKRSVYIG-RWSHFHRQNDLSAGDCLTFELINTGEL-PVM 138 5789999999*************9998887.9***************..******9999.9********************985444.777 PP EEE- CS B3 95 kvfr 98 k++r Bv3_057590_qsmh.t1 139 KFYR 142 7766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-19 | 47 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-19 | 47 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.479 | 50 | 143 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-17 | 50 | 144 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-17 | 53 | 142 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.80E-18 | 63 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MSKASTSNAC PITSTDGIHK NGKRGLKRIE DIHKACSATK ATFKPRGHPY WRTFVQPSTL 60 KWGGMAIPTD FAKEHDLANN CGEVIILDER GKTWQLSLRK YKRSVYIGRW SHFHRQNDLS 120 AGDCLTFELI NTGELPVMKF YRTVS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010672239.2 | 1e-101 | PREDICTED: B3 domain-containing protein REM9-like | ||||
STRING | XP_010672239.1 | 1e-105 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 7e-13 | B3 family protein |