PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_053220_cxup.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 418aa    MW: 46372.4 Da    PI: 6.0217
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_053220_cxup.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81.1e-28177235259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D+++WrKYGqK++kgs++pr+YYrC+s  gC+++k+vers  dp++ ++tY+g+H h+
  Bv3_053220_cxup.t1 177 NDKWAWRKYGQKPIKGSPYPRNYYRCSSLkGCKARKQVERSPIDPNIYIVTYTGNHYHP 235
                         7**************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-30163237IPR003657WRKY domain
SuperFamilySSF1182909.81E-26170237IPR003657WRKY domain
PROSITE profilePS5081129.872171237IPR003657WRKY domain
SMARTSM007741.4E-32176236IPR003657WRKY domain
PfamPF031062.2E-24177235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGEMDINDCW SLIAVVKECT RKAKLRAQLT PENTLTTTTT TTTTTTATTR LSSFETNYAY  60
SQKQFCDQFV PSKSSAAADS STSQDELKDF YTPFLFDQDQ HGPIFSHNIK IDPVVEQGGM  120
SSNLMIEQIS QQQNLQLRNF QINKKQSSPA ISVDHPKKKK FEDRRVVRFT LEELSRNDKW  180
AWRKYGQKPI KGSPYPRNYY RCSSLKGCKA RKQVERSPID PNIYIVTYTG NHYHPCPPLR  240
NSNGSRVKYS GSDPDPPPES KTGYGSGLGG NVMKIEDEEH GDEEHSGGGG GGGGDESFGS  300
GEMDEGNTND YEILIPNSIV DSDLLTGMEQ LNGGGKISSS SHYNENVGFD EIKQHIKGCD  360
PNVNMEVQAK ESGLGYGVRI REIYATTPAT LAGPHELPSS IGQNNWDNGM IRSQSFLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-171772381575WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671600.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A0K9QIJ91e-136A0A0K9QIJ9_SPIOL; Uncharacterized protein
STRINGXP_010671600.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.16e-35WRKY DNA-binding protein 27