PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv3_049590_ztko.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 346aa    MW: 37624.6 Da    PI: 7.2708
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv3_049590_ztko.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-0895119126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+lC+ f++ G C+y  +C+FaHg
  Bv3_049590_ztko.t1  95 YKTKLCCKFRA-GVCPYITNCNFAHG 119
                         9**********.*************9 PP
2zf-CCCH18.63.3e-06169194126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         yk + C+ f+    C+yGd+C+F H+
  Bv3_049590_ztko.t1 169 YKGRHCKKFYTEEGCPYGDNCTFLHD 194
                         78888********************7 PP
3zf-CCCH43.26.3e-14227252126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +  tG C++G++C+FaHg
  Bv3_049590_ztko.t1 227 WKTRICNKWETTGSCPFGSKCHFAHG 252
                         8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.51E-891125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-1493127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8594121IPR000571Zinc finger, CCCH-type
SMARTSM003560.001394120IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-595119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-10167196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-7167196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23168196IPR000571Zinc finger, CCCH-type
SMARTSM003560.058168195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-17222256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-10223257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563226254IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-8226253IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11227252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEFGAEAGFP GGVPDMGGAF DLWGGGGLND QAIWATEDEY RNWNGSETPS GNFSPHPLLR  60
SGSGAGGEPP NKKNRSSQSG DSGGSRSKAI GRMFYKTKLC CKFRAGVCPY ITNCNFAHGL  120
EELRKPPPNW QDIVAAHEEE RGVTVEQREE HQIPTISTTD SRVESQRSYK GRHCKKFYTE  180
EGCPYGDNCT FLHDEQSRSR ESVAISVSPT VGGAFGANGP IQKPSNWKTR ICNKWETTGS  240
CPFGSKCHFA HGLAELHKFG GGLMEGEVRD SSLPPETKAS GMATKPDTSA TQSLSTPRQE  300
FHHVGLGIPS QRSSNVTQGA GPRPAQKWKG PDKISRIYGD WIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671084.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-120C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1U7VQM61e-157A0A1U7VQM6_NICSY; zinc finger CCCH domain-containing protein 56-like
STRINGXP_010671084.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-109C3H family protein