PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_046790_anip.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

ZF-HD

Protein Properties

Length: 400aa MW: 42932.8 Da PI: 8.0216

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_046790_anip.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.3	1.9e-33	74	131	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 +v+YkeC+kNhAaslGgha+DGCgEfmp+++++ +++++lkCaACgCHRnFHR+e+e+ Bv2_046790_anip.t1 74 QVVYKECRKNHAASLGGHALDGCGEFMPAPTATaSDPTSLKCAACGCHRNFHRHEPED 131 799*************************99999*****************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.9E-27	75	129	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-22	75	134	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.54	77	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.8E-30	77	128	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.97E-18	230	303	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-29	233	303	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.8E-28	242	299	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDNLNARAAA AAAATTTTTT TTTSTGPVAG VGGLSIVTPT KSPEAESETP PPRIQSTKPF 60 AFSNGVLKRH APAQVVYKEC RKNHAASLGG HALDGCGEFM PAPTATASDP TSLKCAACGC 120 HRNFHRHEPE DSSTNTGALA HAVIEYHPHH RHHPLPPPQT APPAMASRGA RSPGSQSPPP 180 ISSTYYPGSA PHMLLALSTG GVGGNGAEVN NNGPHPLHHH QHPLQQNTQH LIHHSNSQPS 240 SRKRFRTKFT QEQKDKMHDF AEKVGWKMQK TNEDMVNGFC NEIGVERGVF KVWMHNNKNT 300 FGKIRSNTTI TSTDVGLNCG NTNPSDVGDH NNNNNNNPTG TDEDDELANL NGNGNSNSSS 360 INNSTHHHDH HIHHHHHHQQ YNGKRSNESN APTNGSSSSS

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDNLNARAAA AAAATTTTTT TTTSTGPVAG VGGLSIVTPT KSPEAESETP PPRIQSTKPF  60
AFSNGVLKRH APAQVVYKEC RKNHAASLGG HALDGCGEFM PAPTATASDP TSLKCAACGC  120
HRNFHRHEPE DSSTNTGALA HAVIEYHPHH RHHPLPPPQT APPAMASRGA RSPGSQSPPP  180
ISSTYYPGSA PHMLLALSTG GVGGNGAEVN NNGPHPLHHH QHPLQQNTQH LIHHSNSQPS  240
SRKRFRTKFT QEQKDKMHDF AEKVGWKMQK TNEDMVNGFC NEIGVERGVF KVWMHNNKNT  300
FGKIRSNTTI TSTDVGLNCG NTNPSDVGDH NNNNNNNPTG TDEDDELANL NGNGNSNSSS  360
INNSTHHHDH HIHHHHHHQQ YNGKRSNESN APTNGSSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-19	241	300	16	75	ZF-HD homeobox family protein
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00387	DAP	Transfer from AT3G28920	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693250.1	0.0	PREDICTED: zinc-finger homeodomain protein 9
TrEMBL	A0A0K9RAN8	1e-122	A0A0K9RAN8_SPIOL; Uncharacterized protein
STRING	XP_010693250.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	6e-52	zinc finger homeodomain 1