PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_038880_uroe.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 340aa    MW: 37692.2 Da    PI: 7.2017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_038880_uroe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.23.4e-28142202259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqKe+ ++++prsYYrCt++   +Cp+kk+v+r ++dp +++i Y+geH+++
  Bv2_038880_uroe.t1 142 EDGFTWRKYGQKEILNAKYPRSYYRCTHQklcNCPAKKQVQRLDDDPYTFDILYRGEHTCH 202
                         7****************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-27136203IPR003657WRKY domain
SuperFamilySSF1182902.88E-25139203IPR003657WRKY domain
SMARTSM007741.8E-36141203IPR003657WRKY domain
PfamPF031064.8E-26142202IPR003657WRKY domain
PROSITE profilePS5081119.485142204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEFDLLNLWG ALSPGGTKNL AERCDEIIEI FSRAKYQVLL NPLAFKIHHS PPPTQPLEMA  60
AAAASLEYPQ QHPPRGKGKE VAGEAVDVYM KAESGGQEKQ SSSLGQLRTT SKRSSSRTDD  120
LGGNRRMRMA APKIGNTEMP PEDGFTWRKY GQKEILNAKY PRSYYRCTHQ KLCNCPAKKQ  180
VQRLDDDPYT FDILYRGEHT CHMSNTAPSS VPPPPSPPPT VHHDIFVPHQ PITTVGYDWL  240
SRASSEDACT IFSHNNNPLQ QQLYSVSSST SSVLGMHIVE AAPSSTVRSH QGRSDQVVDL  300
LTNNHHSLVD WSEMFNSGSS STNSMEIIFP PANDKMGQQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-20142201968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670103.20.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A0K9S0375e-91A0A0K9S037_SPIOL; Uncharacterized protein
STRINGXP_010670103.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-38WRKY DNA-binding protein 55