PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_035010_gcaa.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 335aa MW: 37186.8 Da PI: 8.6526

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_035010_gcaa.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.2	2.3e-55	13	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL +k+++ ++++ +++++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke Bv2_035010_gcaa.t1 13 LPPGFRFHPTDEELITYYLVNKISDASFTC-RAVADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKE 102 79************************99.88***********99999********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ + elvg+kktLvfy+grap+gekt+Wvmheyr+ Bv2_035010_gcaa.t1 103 IFNSnTMELVGMKKTLVFYRGRAPRGEKTNWVMHEYRV 140 9856678***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-64	10	161	IPR003441	NAC domain
PROSITE profile	PS51005	60.233	13	161	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	14	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MEGGDQQPKE ESLPPGFRFH PTDEELITYY LVNKISDASF TCRAVADVDL NKCEPWDLPG 60 KAKMGEKEWY FFSLRDRKYP TGVRTNRATN TGYWKTTGKD KEIFNSNTME LVGMKKTLVF 120 YRGRAPRGEK TNWVMHEYRV HCRSAYRSAK DEWVVCRVFQ KSAGVKKYPT TQSTRAINLE 180 MGPSHILTSP MMPLDPAQFN LGRNYMMNNH HVDQLAELSR ALRSGGSTTT FPIQSQINYP 240 TLGGGGGGGG SGPGGGFTIS GLNLNLGGGS QGPAPPLRPM IHQQGAQHDV TSSMMTGLEN 300 SYASVDMNIN GHGGSSGRFM NVDNCVEFDH YWPTY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	12	167	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	12	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	12	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	12	167	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	12	167	19	174	NAC domain-containing protein 19
3swm_B	2e-55	12	167	19	174	NAC domain-containing protein 19
3swm_C	2e-55	12	167	19	174	NAC domain-containing protein 19
3swm_D	2e-55	12	167	19	174	NAC domain-containing protein 19
3swp_A	2e-55	12	167	19	174	NAC domain-containing protein 19
3swp_B	2e-55	12	167	19	174	NAC domain-containing protein 19
3swp_C	2e-55	12	167	19	174	NAC domain-containing protein 19
3swp_D	2e-55	12	167	19	174	NAC domain-containing protein 19
4dul_A	1e-55	12	167	16	171	NAC domain-containing protein 19
4dul_B	1e-55	12	167	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010669469.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1
TrEMBL	A0A1B2RWC8	0.0	A0A1B2RWC8_9CARY; NAC transcription factor 18
STRING	XP_010669469.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-104	NAC domain containing protein 38