PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_031460_zqqw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 305aa    MW: 34362.5 Da    PI: 6.5188
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_031460_zqqw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29147206159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK+ ++++ pr+YY+C+ a  Cpvkkkv+rsa+d ++++ tYegeHnh+
  Bv2_031460_zqqw.t1 147 VKDGYQWRKYGQKVTRDNPSPRAYYKCANApVCPVKKKVQRSADDSSILVATYEGEHNHP 206
                         58**************************999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-29138209IPR003657WRKY domain
PROSITE profilePS5081127.313142208IPR003657WRKY domain
SuperFamilySSF1182903.53E-25144208IPR003657WRKY domain
SMARTSM007746.1E-34147207IPR003657WRKY domain
PfamPF031061.2E-24148206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MESSSNWVLD TSNGFNLNLN LCNNSEINDT TRDDERKSGN LEEELIRMNK ENQKLTQMLA  60
SMCENYSVLQ NQLIGLISPR SKGENEDQNL KKRKYMEVMD YGIQGNTEHS CISYDDSCKG  120
LRLLSTKPKI TNKMLIRTEK SDTSLVVKDG YQWRKYGQKV TRDNPSPRAY YKCANAPVCP  180
VKKKVQRSAD DSSILVATYE GEHNHPQPNA RDHLDNVVLS STYTVNNNVI TSPNSVIPTL  240
NLDLINQNSF NNVEKANDVV DPTALQRLLV EQMASSLTRD PSFTSALAAA ISGKISPSNY  300
DERWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-211462081374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667511.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A0J8CWM50.0A0A0J8CWM5_BETVU; Uncharacterized protein
STRINGXP_010667511.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-71WRKY DNA-binding protein 40