PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv2_025990_gnmo.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bZIP

Protein Properties

Length: 269aa MW: 29655.9 Da PI: 6.5036

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv2_025990_gnmo.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.5	1.7e-09	93	135	8	50
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 r+ NReA r++R++Kka ++ Lee+vk+L N++L +l+ Bv2_025990_gnmo.t1 93 RKSLGNREAVRKYREKKKAHTAYLEEEVKKLRLVNQDLVGKLQ 135 78888*******************************9987776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.8E-6	89	153	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.56E-7	90	135	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-9	91	151	No hit	No description
Pfam	PF07716	9.5E-12	93	135	IPR004827	Basic-leucine zipper domain
CDD	cd14686	5.78E-9	98	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDEGEAEPAD PAFLQTSSPA NSTNDTVSGG LTSVDYILDQ FLKHTKTCTH THTCNPPGPD 60 AAHTHTCYHT HTQLISSEED VKNRCDTSSL KPRKSLGNRE AVRKYREKKK AHTAYLEEEV 120 KKLRLVNQDL VGKLQNQAIF EAEILRLRGL LIHFRGKIDS ELNTFRIQNS CNSNADGSSF 180 KEGDYGIQST SSKGIRLEYQ PQVPCFLTQG NMSLSVGNGR GGENADYLWQ ESCRPVSVDC 240 HVNGNSVVGA SDPQLQDIET LVSAKNQSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692028.1	0.0	PREDICTED: basic leucine zipper 23
Swissprot	Q8VY76	2e-43	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	A0A0K9QL71	1e-103	A0A0K9QL71_SPIOL; Uncharacterized protein
STRING	XP_010692028.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51960.1	3e-30	basic leucine zipper 24

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]