PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_022230_yyxp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 643aa    MW: 73525.3 Da    PI: 9.6718
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_022230_yyxp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-09436475345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +WT+eE ell++  +++G++ Wkt ++++g  + + ++k+ w+
  Bv1_022230_yyxp.t1 436 KWTPEEIELLKKFYEKHGPD-WKTLSNELG--KHRFHVKDTWR 475
                         8*****************88.********9..66777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9360431IPR001005SANT/Myb domain
SMARTSM007170.0032433480IPR001005SANT/Myb domain
SuperFamilySSF466897.05E-10435495IPR009057Homeodomain-like
PROSITE profilePS500906.76436478IPR017877Myb-like domain
CDDcd001676.37E-4436465No hitNo description
Gene3DG3DSA:1.10.10.601.2E-9436487IPR009057Homeodomain-like
PfamPF139211.4E-11437495No hitNo description
PROSITE profilePS500907.898479547IPR017877Myb-like domain
SMARTSM007172.9483549IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-7488548IPR009057Homeodomain-like
SuperFamilySSF466898.13E-5527605IPR009057Homeodomain-like
PROSITE profilePS500907.306549602IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MNLGVFSVSN EVLEVHEVGN GEDSRLRGDN STQQVKKKNK SKKCKEVVEN VQPVKEKKRE  60
KKGEVGAGDS GKNRDGGSKK RKEKSFGRNT EEDINAGVLE NSKKNRTAEP TDNSNRNKKL  120
KDKKRKKKGG VGAGDSGKTR DRGGKKRKEK SLGCNTEEDI NAGVLENSKK NGTAEPTDNS  180
NHNKKLKDKK RKKKDDVGAG DSGKNRDRGS KKRKEKSLGC NTEEDINAGV LENSKKNGTA  240
EPTDNSNHNN KLKDKKRKKK GDIGAGDSGK NRDRGSKKRK EKSLGCNTEE DINAGVLENS  300
KKDETAEPTD NSNNNKKSKK VKFSDNVEVF PITDTSSKGK KKRLDDGSKE SNDLEDGVIH  360
GKRFSKEDDE IIQDAVYKYI EDHRLGEQGL EMILNCKSHP EVRHCWREIG EALPWRHYRA  420
VYCRAHVLFE RSEARKWTPE EIELLKKFYE KHGPDWKTLS NELGKHRFHV KDTWRRIRYP  480
NLKKGRWTQE EYQNLFNLVN LDLSMKVFEE KKTKHGMLRD NICWEAVGEK LSTRTNSLCC  540
TKWYDQLTSP MVSEGEWANS DDYRLLIVLV DLDATCEEDV DWDYLLEHRS GDVCRKRWND  600
MIRHIGENGV KPFSEQVEIL SQRYCPDILE AREIYDNKVP VDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183193KKLKDKKRKKK
2254258KKRKK
3257279KKKGDIGAGDSGKNRDRGSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692728.10.0PREDICTED: DNA-binding protein REB1-like
RefseqXP_010692729.10.0PREDICTED: DNA-binding protein REB1-like
TrEMBLA0A0K9RAV40.0A0A0K9RAV4_SPIOL; Uncharacterized protein
STRINGXP_010692728.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-123MYB_related family protein