PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv1_022070_hgze.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | ARF | ||||||||
Protein Properties | Length: 876aa MW: 97074.3 Da PI: 5.0263 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.3 | 7.1e-24 | 145 | 246 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae+ ++++ + +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD v+F Bv1_022070_hgze.t1 145 FCKTLTASDTSTHGGFSVPRRAAEKLfppldyTMQPPFQ-ELVVKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVGSKRLRAGDAVLFI-- 232 99*********************999****996666664.9************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++++l+++v+r+ Bv1_022070_hgze.t1 233 RDEKGQLMIGVRRA 246 569999******97 PP | |||||||
2 | Auxin_resp | 112.8 | 3.3e-37 | 271 | 354 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa++k++F+++YnPra+++eFv++++k++ka++ ++vs+GmRf m+fete+s +rr++Gt vg+sdldp+rWp+SkWr+L+ Bv1_022070_hgze.t1 271 AAHAAANKTPFTIFYNPRACPTEFVIPANKYRKAVYgTQVSAGMRFGMMFETEESGKRRYMGTLVGISDLDPLRWPGSKWRNLQ 354 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-46 | 132 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.6E-41 | 137 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.05E-22 | 144 | 245 | No hit | No description |
PROSITE profile | PS50863 | 12.943 | 145 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-21 | 145 | 246 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.3E-24 | 145 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-32 | 271 | 354 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.4E-9 | 765 | 854 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.855 | 768 | 852 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.23E-9 | 768 | 847 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 876 aa Download sequence Send to blast |
MGSVEEKIKS SGGPPPSSLL EEMKLLKEMQ DHSGARKPLS SELWHACAGP LVSLPQVGSL 60 VYYFPQGHIE QVAISTKRPA TSQIPNYPNL PSQLMCQVHN VTLHADKDTD EIFAQMSLQP 120 IKTDKDVFPI PDFGLKASKH PTEFFCKTLT ASDTSTHGGF SVPRRAAEKL FPPLDYTMQP 180 PFQELVVKDL HDNTWTFRHI YRGQPKRHLL TTGWSVFVGS KRLRAGDAVL FIRDEKGQLM 240 IGVRRANRQT TTLPSSVLSA DSMHIGVLAA AAHAAANKTP FTIFYNPRAC PTEFVIPANK 300 YRKAVYGTQV SAGMRFGMMF ETEESGKRRY MGTLVGISDL DPLRWPGSKW RNLQVEWDEP 360 GCGDKQNRVS AWEIETPESL FLFPSLTSGF KRPFHPGFFG GELEWGNSMK RPFIQIPDMG 420 AANLSYASLP NVWSEQLVKA MMRPENMSYP SMLASCSPSP MLQETKARID TAMLQKPQIA 480 SSQTVPVQNY PLQQFNQREL GDMSGIEQPS KTNQPTNDAD KTKLEPLCEP SQLSQLPSTG 540 HCNEERQTSN PSNPPSQNNF EIKDNSHKLM QPPAMSSVFQ SQLTDIPPTD LSSLNGLFPY 600 LDAPDWLPYP SATIPEVIDP SLSSIGQDLW DQNQNLRYPA QSDQFGSYSQ LSDETNNQSG 660 IYSCIDLDVG NGGNAMVDAS ISNAVLNKLC PSKESSLQYS SDCLVGNFSS SQDLQSQITS 720 ASLADSQAFL QDFPDNNNSG GTSSSNMDFD ETNLLQNNSW QQVVPPMRTY TKVQKTGSVG 780 RSIDVTSFKD YEELRSAIER MFGLEGLLND PRGSGWKLVY VDFENDVLLV GDDPWEEFVG 840 CVRCIRILSP AEVQQMSEEG MQLLNTNAIP GITGTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 17 | 379 | 31 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010692716.1 | 0.0 | PREDICTED: auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A0K9QSD3 | 0.0 | A0A0K9QSD3_SPIOL; Auxin response factor | ||||
STRING | XP_010692716.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |