PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_021380_gmre.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bZIP

Protein Properties

Length: 360aa MW: 40871.5 Da PI: 7.3013

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_021380_gmre.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.1	5.9e-11	78	106	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k++rr+++NReAA++sR+RKka++++Le Bv1_021380_gmre.t1 78 KVQRRLAQNREAAKKSRLRKKAYVQQLES 106 99*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0037	74	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.783	76	120	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-7	78	126	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.7E-8	78	129	No hit	No description
Pfam	PF00170	3.8E-8	78	107	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-27	165	238	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MSSTTIQVTN YASMGIYEPP RAISMWRDTS KAITSGAGAS SSTQAEPGHE NKFEYEYTSP 60 EMMEPSFNSE DAARLSEKVQ RRLAQNREAA KKSRLRKKAY VQQLESSRLK LAQLELQIQQ 120 TKQQASCLAA ALPANLGFAG HISTGLAAFE MEYGHWVEEQ NRQNSELRNA LYVNVADVEL 180 KILVENGLNH YYHLFRIKAD AAKSDVFYLM SGMWRSSVER FFLWIGGFRP SELLKILLPQ 240 IEPSNQQMED IDRLLCASRQ AEDALSRGVD KLQQNLTHIM FEQRLGVEMY GYQMTCALEK 300 LEAIEGFVIQ ADHLREQTLQ LMSRILTSHQ AARGLLALGE YFHRLRALSS LWAARPRDPG

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MSSTTIQVTN YASMGIYEPP RAISMWRDTS KAITSGAGAS SSTQAEPGHE NKFEYEYTSP  60
EMMEPSFNSE DAARLSEKVQ RRLAQNREAA KKSRLRKKAY VQQLESSRLK LAQLELQIQQ  120
TKQQASCLAA ALPANLGFAG HISTGLAAFE MEYGHWVEEQ NRQNSELRNA LYVNVADVEL  180
KILVENGLNH YYHLFRIKAD AAKSDVFYLM SGMWRSSVER FFLWIGGFRP SELLKILLPQ  240
IEPSNQQMED IDRLLCASRQ AEDALSRGVD KLQQNLTHIM FEQRLGVEMY GYQMTCALEK  300
LEAIEGFVIQ ADHLREQTLQ LMSRILTSHQ AARGLLALGE YFHRLRALSS LWAARPRDPG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692601.1	0.0	PREDICTED: transcription factor TGA3
Refseq	XP_019107769.1	0.0	PREDICTED: transcription factor TGA3
Swissprot	Q93ZE2	1e-131	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A0K9QZU2	0.0	A0A0K9QZU2_SPIOL; Uncharacterized protein
STRING	XP_010692601.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-125	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]