PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_020230_ssoy.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

MYB_related

Protein Properties

Length: 580aa MW: 60992.3 Da PI: 8.4479

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_020230_ssoy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.2e-09	181	226	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH.HHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar.tmgkgRtlkqcksrwq 45 r++W++eEd+ l+ av+++G g+W++I + + +R + q+ rw+ Bv1_020230_ssoy.t1 181 RKPWSEEEDLELITAVQKFGEGSWAAIIKgDFKGNRNATQLAQRWN 226 789***********************96523335999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.0E-14	176	231	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.555	176	233	IPR017930	Myb domain
SuperFamily	SSF46689	6.28E-12	178	230	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-10	180	231	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-8	181	226	IPR001005	SANT/Myb domain
CDD	cd11660	7.56E-12	182	230	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence Send to blast
MVDAIDKKLK KVAVTEEDVC TLLQRYSATT VLAVLREIAQ FPKVKIDWQL LVKKTKTGIT 60 SPREYQMLWR HLAYRQPLIE NVGPEDQPLD DDSDLECELE ACPPVINEAA IEASNCVKVL 120 ASGSAYESSF PNSSSVEGGV LNVNSPKVSS ENLQVHKQSQ AAGIFGEGLD ANGATNNRKR 180 RKPWSEEEDL ELITAVQKFG EGSWAAIIKG DFKGNRNATQ LAQRWNIIRK KQGTSNVRGA 240 KTATAQLTEA QLATRHALDM AFKDKLSTGC GTVGNESAGT ETAKTSASKT DLPVTNAAIP 300 ASQPQPSPVT YATSSAKPAP VASTPKPRPQ KKAAQTSVSS DPIQAAAVAA GARIASPSDA 360 ASLFKAVQSN NAVRFRAGSS LINTSAAGSS SPLPPNVHFI RTGLASSPTS GASEAAPFAA 420 DQQAKGSAIR PSVPPATVPQ LPKARTTSII ATDQTNADQQ IEIKISKAVN IQVSDTKPMT 480 RVQVDSASLP QHLPNALVDK SRATSLGADV SPVKGIADVG NSEGATNRDV AANESKYGGS 540 SAVKEAHQNI LTVSVDSGAE KTEVSSERFA GAEISEQANL

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence Send to blast

MVDAIDKKLK KVAVTEEDVC TLLQRYSATT VLAVLREIAQ FPKVKIDWQL LVKKTKTGIT  60
SPREYQMLWR HLAYRQPLIE NVGPEDQPLD DDSDLECELE ACPPVINEAA IEASNCVKVL  120
ASGSAYESSF PNSSSVEGGV LNVNSPKVSS ENLQVHKQSQ AAGIFGEGLD ANGATNNRKR  180
RKPWSEEEDL ELITAVQKFG EGSWAAIIKG DFKGNRNATQ LAQRWNIIRK KQGTSNVRGA  240
KTATAQLTEA QLATRHALDM AFKDKLSTGC GTVGNESAGT ETAKTSASKT DLPVTNAAIP  300
ASQPQPSPVT YATSSAKPAP VASTPKPRPQ KKAAQTSVSS DPIQAAAVAA GARIASPSDA  360
ASLFKAVQSN NAVRFRAGSS LINTSAAGSS SPLPPNVHFI RTGLASSPTS GASEAAPFAA  420
DQQAKGSAIR PSVPPATVPQ LPKARTTSII ATDQTNADQQ IEIKISKAVN IQVSDTKPMT  480
RVQVDSASLP QHLPNALVDK SRATSLGADV SPVKGIADVG NSEGATNRDV AANESKYGGS  540
SAVKEAHQNI LTVSVDSGAE KTEVSSERFA GAEISEQANL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692386.1	0.0	PREDICTED: uncharacterized protein LOC104905510
TrEMBL	A0A0K9QVI7	0.0	A0A0K9QVI7_SPIOL; Uncharacterized protein
STRING	XP_010692386.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-49	MYB_related family protein