PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_018370_yfrd.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

SBP

Protein Properties

Length: 286aa MW: 32475.7 Da PI: 8.8793

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_018370_yfrd.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.4	1.3e-40	150	226	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+++ Bv1_018370_yfrd.t1 150 CQAEGCNADLNHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSNN 226 **************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.0E-34	144	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.129	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-38	148	228	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.0E-31	150	223	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MLRYEWNNHS SPPPNLILSD IDYHHHHNHN HNHNDDDDFV SSTNHHRQIF GDPFSNPCTF 60 THDNTPPQYQ NIIPDPRAFH TASAASSSLL TLESLSSVMQ IPKTEPDIFT NRPIGLNLGR 120 RTYFSADDDL VSRLYRRSRA VEPAAHSPKC QAEGCNADLN HAKHYHRRHK VCEFHSKAST 180 VIAAGLTQRF CQQCSRFHLL SEFDNGKRSC RKRLADHNRR RRKSNNHRIT STTTASMSSE 240 NAQSSPSHNI LRSPSDSGMN SSSSVTIAIS PSRVSFDSSF MQRSYD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-31	150	223	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692128.1	0.0	PREDICTED: squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	1e-67	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A0K9R9E3	1e-133	A0A0K9R9E3_SPIOL; Uncharacterized protein
STRING	XP_010692128.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-62	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]