PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_017620_fumq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 254aa    MW: 29242.1 Da    PI: 7.9521
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_017620_fumq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.5e-32179237159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+
  Bv1_017620_fumq.t1 179 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHS 237
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-34164237IPR003657WRKY domain
SuperFamilySSF1182901.22E-28171237IPR003657WRKY domain
PROSITE profilePS5081129.608174236IPR003657WRKY domain
SMARTSM007746.5E-38179238IPR003657WRKY domain
PfamPF031063.2E-25180236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MERDHTRSNN NFPNYDLHMS LIHSNNHHHE NTTTNLQGFP QSLELADDHS NHVMLTTFLT  60
HQPPPPPPPP PYQIAEHRVS PLSNTATATT TTKGLVGNFN DYVTTRHSWN ISTTDQQVEG  120
SSAPKATMAG DNTNGDGRND EAEHSWWKSS TSEKNKMKIR RKLREPRFCF QTRSDIDVLD  180
DGYKWRKYGQ KVVKNSLHPR SYYRCTHSNC RVKKRVERLS EDCRMVITTY EGRHNHSPCD  240
DSSSSEHDQC FSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25170236874Probable WRKY transcription factor 4
2lex_A1e-25170236874Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163KIRRKLR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692038.10.0PREDICTED: probable WRKY transcription factor 48
TrEMBLA0A0K9RFP61e-86A0A0K9RFP6_SPIOL; Uncharacterized protein
STRINGXP_010692038.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.12e-68WRKY family protein