PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_015230_mzro.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 336aa MW: 37566.7 Da PI: 4.6738

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_015230_mzro.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.2e-09	260	300	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR riN+++ L+ l+P+ +K++ +++Le+A +Y+k Lq Bv1_015230_mzro.t1 260 RKRRMRINERLRILQNLVPNG-----TKVDISTMLEEAFHYVKFLQ 300 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.56	250	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-12	251	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-10	255	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-8	256	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.03E-9	259	304	No hit	No description
Pfam	PF00010	4.2E-6	260	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGAFLDGEWE SICKLFTVDE SPDLSANLFE YSSPANELDE SPAFAASSSF SHVDINSFST 60 LSGWISKPPH NFLETRKHTN TDSFADNFLP EATDILSCID FSMVNGEIDG LFSLPFLQNT 120 RNDTMSGDDD VHTNNAVNMS SATTELTLKR KREVPLLQDN KDEKTSLMET PKKNARTSKH 180 GLKDKKKANQ KTEEEITATV ITKETNENAD SNSDDSIPCA SEEITETEDS NSNISVSQSS 240 TGKKRANRGA ATDPQSLYAR KRRMRINERL RILQNLVPNG TKVDISTMLE EAFHYVKFLQ 300 LQIRLLSSDD LWMYAPLAYN GLDVGAFQRM SPFFSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	262	KKRANRGAATDPQSLYARKRR

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010688183.1	0.0	PREDICTED: transcription factor bHLH54
Swissprot	Q84WK0	6e-49	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A0K9RLF0	8e-86	A0A0K9RLF0_SPIOL; Uncharacterized protein
STRING	XP_010688183.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	2e-50	ROOT HAIR DEFECTIVE 6-LIKE 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]