PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_014620_pnwp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 410aa    MW: 44095.9 Da    PI: 7.0044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_014620_pnwp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-10254302355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Bv1_014620_pnwp.t1 254 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 302
                         58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-17249318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-11249306No hitNo description
PROSITE profilePS5088815.485251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16252319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7254302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGDDGSSQMG FQHSGESMLN SPSSGMNSRS MDLTSVYGSG WDPMVSISQR GSFGASSMVS  60
HGELTKSSSY PILMESHPQG ISSSHLVHYP SSDPSLAHML PKLPMLGGRN FTDIGSPFGL  120
SGGSQISNAL FPQNYGANKS GLKERQSMNV TQAERGCQMA DGMAVGVSPN GKRKRDSVSP  180
SPTDENADGD AHKDHISEGS GQKEQDDKKK KSEHNAGGNS SSKQAGKQPK DDLQGEDSKQ  240
NYIHVRARRG QATNSHSLAE RVRREKISER MRLLQELVPG CNKITGKAVM LDEIINYVQS  300
LQQQVEFLSM KLATVNPELN VDIERLLSKD ILHSRGSGPP VLGFDQGMGS SHAFSQGIHQ  360
NLTMPNSASQ YHHMSQAVWD GDLQSLLHMG FDSNSAVAGL GPNGSSKTEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687581.10.0PREDICTED: transcription factor bHLH74
RefseqXP_010687589.10.0PREDICTED: transcription factor bHLH74
TrEMBLA0A0K9S0140.0A0A0K9S014_SPIOL; Uncharacterized protein
STRINGXP_010687581.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-73bHLH family protein