PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_008950_gadr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 634aa    MW: 71391.8 Da    PI: 8.7929
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_008950_gadr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-09577623347
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                          W+   +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ ++
  Bv1_008950_gadr.t1 577 VWSSVQERALVQALKTFPKEtpqRWERVAAAVP-GKTVNQCKKKFASL 623
                         6********************************.*********99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465654.84E-1992175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.6E-2093187IPR001623DnaJ domain
SMARTSM002713.5E-1396171IPR001623DnaJ domain
CDDcd062571.62E-1297168IPR001623DnaJ domain
PROSITE profilePS5007618.39597179IPR001623DnaJ domain
PfamPF002265.6E-1797176IPR001623DnaJ domain
PRINTSPR006255.2E-9102120IPR001623DnaJ domain
PRINTSPR006255.2E-9120135IPR001623DnaJ domain
PRINTSPR006255.2E-9151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.1E-4434482IPR009057Homeodomain-like
PROSITE profilePS500906.121435478IPR017877Myb-like domain
SMARTSM007175.2E-5439492IPR001005SANT/Myb domain
PfamPF002492.1E-5441482IPR001005SANT/Myb domain
SuperFamilySSF466891.48E-6441484IPR009057Homeodomain-like
CDDcd001673.93E-4442482No hitNo description
PROSITE profilePS512939.397573628IPR017884SANT domain
SMARTSM007171.3E-9574626IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-9576630IPR009057Homeodomain-like
PfamPF002492.3E-7577623IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-5577623IPR009057Homeodomain-like
CDDcd001671.05E-6578624No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MAQQVSIVRR ISYTQELEDG KPLYVSSNCL PFKVSKFEPA GHSFHSAALR LSGFCEEDSD  60
KDDQSVSSDK EPTFVPSFES YSGKSKKKSG SDGKQQDHYA LLGLAHLRYL ATEEQIKKSY  120
RDVALKYHPD KQAALLLAEA TEAAKQVKKD EIENHFKAIQ ESYEVLMDPL KRRIYDSTDE  180
FDDEIPTDCA PQDFYKVFGP AFMRNSRWSV NQPAPSLGDD NSSFDEVDKF YNFXWMERQN  240
AKLTEKARKE EYARVRSLVD NAYKRDPRIV KRKEFEKAEK KRKKEAKFLA KKLQDEEAAR  300
AAEEEKRKKE EEDRKAAEAA SLQKKAKEKE KKLLRKERNR LRSLAAQVAS DYVFDISGDD  360
VESLCMSLNM ERLKELCDRI EGEQKDDQVK SLKESLGGEV NGEEKPNPNQ NPNPKPNPAQ  420
TGAAKSNGSM TSSSSHEKKE KPWAKEEIDL LRKGMQKFPK GTSRRWEVIS EYIGTGRSVE  480
DILKATKTVL LQKPDSSKAF DSFLEKRKPA ASISSPLSTR EEVQGVAIVN GGPDATSSTP  540
KDPPNVSSSS GSDTQQESAE VAATDNLASL SLSDQDVWSS VQERALVQAL KTFPKETPQR  600
WERVAAAVPG KTVNQCKKKF ASLKETFRNK KTAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279283KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104387.10.0PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 2-like
TrEMBLA0A059BI980.0A0A059BI98_EUCGR; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain