PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_007440_iucq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 267aa    MW: 31388 Da    PI: 9.7219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_007440_iucq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.89.7e-1421101990
                         HHHHTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   9 dvlksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ++k++ +v+pk+f ++    + +  + k ++l+d +s + W +++       r+ +++GW+ F+++++L+ gDfvvFk++g+  f
  Bv1_007440_iucq.t1  21 PNFKTN-FVIPKSFHTHLqvdETNRDKRKCVILYDsKSTQPWFIEV----EFPRFNFKSGWEIFCEDHNLQIGDFVVFKHQGNWVF 101
                         567777.*******95559984444456679999956779******....3335779**********************9886555 PP
2B338.52e-12174264596
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                          +++ +l+sg + +p++ a e+g+  ++ +  +l de+g++W++ l+y+ k +++++   W +  ka gLk g +v F+l+++  +++ ++
  Bv1_007440_iucq.t1 174 VVNKTSLASGDIEIPREIAYEIGIG-RRRFNFMLVDEEGKQWKMGLRYSLKCQKHYIY-RWPSLYKAYGLKIGQSVGFELIKSnGNTNTTM 262
                         56778899999***********877.5679******************9999998888.7********************98756665555 PP

                         EE CS
                  B3  95 kv 96 
                         k+
  Bv1_007440_iucq.t1 263 KF 264
                         55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-1610111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1711116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.98412109IPR003340B3 DNA binding domain
SMARTSM010191.8E-915109IPR003340B3 DNA binding domain
PfamPF023623.8E-102298IPR003340B3 DNA binding domain
CDDcd100171.82E-1027107No hitNo description
Gene3DG3DSA:2.40.330.101.3E-9166255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-9167254IPR015300DNA-binding pseudobarrel domain
CDDcd100176.73E-10169257No hitNo description
PROSITE profilePS508639.545170267IPR003340B3 DNA binding domain
SMARTSM010191.7E-4171266IPR003340B3 DNA binding domain
PfamPF023621.6E-10175265IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRPPSSKKFS KKSRFFQPLV PNFKTNFVIP KSFHTHLQVD ETNRDKRKCV ILYDSKSTQP  60
WFIEVEFPRF NFKSGWEIFC EDHNLQIGDF VVFKHQGNWV FDVLIYDPSG CEREFPAFDV  120
DLSKAKVKPS KIPRDCDIGT SRDYIKGLEM MGNEEDPKST VTFEPTRRPY FRDVVNKTSL  180
ASGDIEIPRE IAYEIGIGRR RFNFMLVDEE GKQWKMGLRY SLKCQKHYIY RWPSLYKAYG  240
LKIGQSVGFE LIKSNGNTNT TMKFYSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674926.10.0PREDICTED: B3 domain-containing protein REM5
STRINGXP_010674926.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-25B3 family protein