PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_006910_rqak.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bZIP
Protein Properties Length: 157aa    MW: 18101.2 Da    PI: 5.775
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_006910_rqak.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.11.4e-11462563
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                        ++ +r+++NRe+ArrsR RK++ ++ L   +++L  eN +  ++ +  ++++ ++++e+
  Bv1_006910_rqak.t1  4 RKRKRMASNRESARRSRMRKQKHLDDLMAQADQLRRENNQILQTTNVTTQQYVNVEAEN 62
                        5789***********************************99999988888887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-14164IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.507265IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-8379No hitNo description
PfamPF001701.8E-8455IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.97E-11457No hitNo description
CDDcd147026.12E-19555No hitNo description
PROSITE patternPS000360722IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDERKRKRMA SNRESARRSR MRKQKHLDDL MAQADQLRRE NNQILQTTNV TTQQYVNVEA  60
ENSVLKAQMN ELSQRLQSLN DILNYMNTLN GINSFVEVEE ESLDILGHDM GDFGIMNGGY  120
FGNFTQNNNN INNVIGNPWN LGFLNQPIMA SSNVLQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324RKRKRMASNRESARRSRMRKQK
21623RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672909.21e-112PREDICTED: bZIP transcription factor 44
SwissprotC0Z2L53e-42BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0K9REL18e-74A0A0K9REL1_SPIOL; Uncharacterized protein
STRINGXP_010672920.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.16e-31basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]