PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv1_006240_noeh.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

DBB

Protein Properties

Length: 327aa MW: 35915.3 Da PI: 6.4948

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv1_006240_noeh.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.5	5.7e-08	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++k +++fC ++ lC+ C + H+ H+ Bv1_006240_noeh.t1 4 QCDVCSKKDASIFCSADEAALCDVCDQRVHHAnklaskHK 43 7****************************64447777776 PP
2	zf-B_box	29.7	1.3e-09	56	95	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++ek++ lfC++++ lC dC l+ H+ H Bv1_006240_noeh.t1 56 PLCDICQEKKALLFCQQDRAILCGDCDLSLHSAneytqkH 95 68*****************************655566666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.893	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.15E-5	3	47	No hit	No description
Pfam	PF00643	6.8E-6	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	1.8E-8	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.855	53	100	IPR000315	B-box-type zinc finger
SMART	SM00336	2.8E-14	53	100	IPR000315	B-box-type zinc finger
CDD	cd00021	8.06E-11	56	100	No hit	No description
Pfam	PF00643	9.6E-8	56	96	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009641	Biological Process	shade avoidance
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MKIQCDVCSK KDASIFCSAD EAALCDVCDQ RVHHANKLAS KHKRFSLLHP SSSHFPLCDI 60 CQEKKALLFC QQDRAILCGD CDLSLHSANE YTQKHNRFLL TGIKLSAMVI SDNNKKKNND 120 TSIIISNENG GDPVPDFKSI KKPTSDFSEK TPNSAASIFT NNSSNNSSST VSSTNNQMIC 180 GGSTSNISEY LIDMLPGWHF EDLLLDSASP APLGFCKSDI HDFEVNEDML SFFDVENDKE 240 LTCSSTQSES FWVPQAPLGL AAGGGNVFGQ PSEFHNNMKS GLVYGTKQKQ DTSVSAIKLN 300 RKCLKDDAFT VPQITSSVGS KRTRPFW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672311.1	0.0	PREDICTED: B-box zinc finger protein 20
TrEMBL	A0A0K9RZ11	1e-140	A0A0K9RZ11_SPIOL; Uncharacterized protein
STRING	XP_010672311.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	4e-60	salt tolerance homolog2