PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_004020_hacp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 379aa    MW: 40949.1 Da    PI: 6.6987
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_004020_hacp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31201259259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dpk++++tY+ eHnh+
  Bv1_004020_hacp.t1 201 SDMWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPKMFIVTYTAEHNHP 259
                         79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081135.301195261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.6E-31195261IPR003657WRKY domain
SuperFamilySSF1182902.62E-26198261IPR003657WRKY domain
SMARTSM007743.0E-37200260IPR003657WRKY domain
PfamPF031066.3E-26202259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
METPPDWDLL AVVRSCCTTT STAANTTSTA DLEPSHLPPP PAQQQQQQNP CFSSPSSSTN  60
CSFFQFSNPF ETSSSTTSFL GGQQELQDIC RPLICSTTTS TTSNTNIILN NSNNIKNNNN  120
SFQSISSASL ASPVSSPSSV ITGRSFGITE QPQLRGLIKP SHVIFGANSS SVNASSHTQR  180
TKKRKNLMKK VCHVPAEGLS SDMWAWRKYG QKPIKGSPYP RGYYRCSSSK GCLARKQVER  240
NRSDPKMFIV TYTAEHNHPM PTHRNSLAGS TRQKPLSTAG TPPEQPTCSS PSAASLSPLT  300
EKSESKTEGD DLLMKEEEDN NNNNEMGLSD LMLNDDFYVG FEQIDASDGS DGFSDHFSPS  360
SEFPWLASNS STAAAAGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-22188262580Disease resistance protein RRS1
5w3x_D3e-22188262580Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669828.10.0PREDICTED: WRKY transcription factor 22
TrEMBLA0A0K9RJ461e-147A0A0K9RJ46_SPIOL; Uncharacterized protein
STRINGXP_010669828.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-62WRKY family protein