PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv1_003980_zfhn.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | WRKY | ||||||||
Protein Properties | Length: 225aa MW: 25823.7 Da PI: 6.9421 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.7 | 4.2e-32 | 145 | 203 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++ +prsYYrCt+ +C+vkk+v+r ++d+++v++tYeg Hnh+ Bv1_003980_zfhn.t1 145 LDDGYRWRKYGQKSVKNNIYPRSYYRCTHMTCNVKKQVQRLSKDNSIVVTTYEGVHNHP 203 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.1E-33 | 132 | 203 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.26E-28 | 137 | 204 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.115 | 140 | 205 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-37 | 145 | 204 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-26 | 146 | 203 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDELQNVVAS DHHHHIPSSL FSPHYADLHQ CNQTSNLDPS INVSDAVDWS SFLINSPTVN 60 IACDQDDDKL MIDCDLEHDD QQINGSDHLL GGGNNEDERR RSCVIDHNKM DSISKRSSNS 120 SSTRSRKAKV IPRFAFQTRS KEDILDDGYR WRKYGQKSVK NNIYPRSYYR CTHMTCNVKK 180 QVQRLSKDNS IVVTTYEGVH NHPCEKLMEA LSPLLNQMQF LSRLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-26 | 135 | 202 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-26 | 135 | 202 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010669789.1 | 1e-169 | PREDICTED: probable WRKY transcription factor 71 | ||||
Swissprot | Q9FFS3 | 6e-53 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | M5X304 | 2e-58 | M5X304_PRUPE; Uncharacterized protein | ||||
STRING | XP_010669789.1 | 1e-168 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46130.1 | 1e-53 | WRKY DNA-binding protein 43 |