PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_003380_qcmg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 339aa    MW: 37844.1 Da    PI: 6.909
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_003380_qcmg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.45.2e-27122181258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          Dgy+WrKYGqKe+ g+++pr+YYrCt++   +C ++k+v++s+ed ++ +itY+geH++
  Bv1_003380_qcmg.t1 122 VDGYSWRKYGQKEILGAKYPRGYYRCTHRhtrNCVATKQVQKSDEDSSMYKITYRGEHTC 181
                         5***************************9999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.413116179IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-26119182IPR003657WRKY domain
SMARTSM007741.6E-37121183IPR003657WRKY domain
SuperFamilySSF1182909.81E-24121181IPR003657WRKY domain
PfamPF031062.0E-25123181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMNELLQGME FAKQLRNQIS KPGNNNNHSS SLSNNDDHQA LYYLDKMLSS FDKTINIAKL  60
IHINKVPQLE SPHSLTISSP HSENSHPEFP PSKRRKSVMP KWTKNVKINN GRVISGIENA  120
LVDGYSWRKY GQKEILGAKY PRGYYRCTHR HTRNCVATKQ VQKSDEDSSM YKITYRGEHT  180
CVQGTQLMKA QQDTITPAQT KSSPQQPSSP QQQEIYIGLG PGGDLKVEPE LKPENQAQLS  240
QSLSFNSAYL QPDNIENFML SFCTPLGSPT TSHSSYLPES PYPAPMAHTG LSVLTTEPDI  300
NEALSGPNSV TNSSGIGGGD FEFSFEEYIN FEGNFSFDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20121181868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669256.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A0K9R5K51e-125A0A0K9R5K5_SPIOL; Uncharacterized protein
STRINGXP_010669256.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-39WRKY family protein