PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv1_002090_gcco.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | bHLH | ||||||||
Protein Properties | Length: 458aa MW: 52248.5 Da PI: 6.8451 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42 | 1.7e-13 | 227 | 278 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Bv1_002090_gcco.t1 227 QRMTHIAVERNRRRQMNEHLNALRSLMPPS---YVQRGDQASIIGGAIDFVKELE 278 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.47E-12 | 225 | 282 | No hit | No description |
PROSITE profile | PS50888 | 15.72 | 226 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-17 | 226 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-11 | 227 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-14 | 227 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-11 | 232 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MEKLQGPINP CIIAEEFEVG WLEEFISNNG GNFKVEDPYY HNTTTEDTSY GDLHYSLPSL 60 EDKMPFLQML QSVEQQQQQH QQQQCHQLMH LEPNFQFLLK LQHQKLNFFP SPEIESCVTT 120 TTTTHNNNHN IDSNNHNNDM IIKNIMDNLQ CHHQGVKSEG EIHQQQQIIS SSGVVETLKC 180 KNSNSSSRSK KSATCCSTST VVVGLKEKRK RKRTTRPAKN KEEVETQRMT HIAVERNRRR 240 QMNEHLNALR SLMPPSYVQR GDQASIIGGA IDFVKELEQM LQSLQAQKRM RQYEENGDVS 300 ISSSSTSSSS NLHYNNIFMA SPSSSFHQLR NQFHSHEEGN GNGNGNGNSI DECMMMRKSN 360 NNEEYSAEKR SDLADIEVVV IQNHVNLKIQ CQRRAGQLLK AIVAFEELRL TVLHLNITSL 420 HALVHYSFNL KIEDDCRLGS ADEVARAVHQ IFSLINLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 227 | 238 | RMTHIAVERNRR |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010688515.1 | 0.0 | PREDICTED: transcription factor bHLH67 isoform X1 | ||||
Swissprot | Q9M128 | 2e-66 | BH057_ARATH; Transcription factor bHLH57 | ||||
TrEMBL | A0A0K9RJ71 | 1e-170 | A0A0K9RJ71_SPIOL; Uncharacterized protein | ||||
TrEMBL | A0A0K9RKS4 | 1e-170 | A0A0K9RKS4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010688515.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 2e-63 | bHLH family protein |
Publications ? help Back to Top | |||
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