PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_000090_pnxw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 263aa    MW: 28553.8 Da    PI: 6.0064
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_000090_pnxw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-182979155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Bv1_000090_pnxw.t1 29 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 79
                        59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.6943087IPR001471AP2/ERF domain
PfamPF008471.7E-113079IPR001471AP2/ERF domain
SMARTSM003802.5E-363093IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-203089IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.4E-303089IPR001471AP2/ERF domain
PRINTSPR003671.9E-83142IPR001471AP2/ERF domain
CDDcd000182.01E-193189No hitNo description
PRINTSPR003671.9E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVKSEQKSQC EASSLSSPIP SSSLSSLKKK YKGVRMRSWG SWVSEIRAPN QKTRIWLGSY  60
STPEAAARAY DAALLCLKGS SANLNFPLSA YSNCHPLIPC HDSATVMSPK SIQRVAAAAA  120
ANDNNVVDDT STNTNTNTHD PSSLSSQTHP SSSISMSISS SSSVSLSSSP SLSSSSPELQ  180
HLHQLIDDTI SLTPAFDNNN DVSSMANHMP VNMMMNDPWS CFDLSPKCID PMINSMFFNP  240
PSINIIDIDH FYDEGDIPLW SYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-152992468ATERF1
3gcc_A4e-152992468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670581.10.0PREDICTED: ethylene-responsive transcription factor ERF014
TrEMBLA0A0K9RXR21e-55A0A0K9RXR2_SPIOL; Uncharacterized protein
STRINGXP_010670581.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.17e-32ERF family protein